Results for "Size"
Users
About me: A Computational biologist, currently investigating the impact of transposable elements on the adaptation of the rice genome under fungal pathogen challenges and genome...1143 days ago
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
...(s)Remove 0 Package(s)Total download size: 1.0 MIs this ok [y/N]: yDown....cpan/build]Always commit changes to config variables to disk? [no]Cache size for build directory (in MB)?...3953 days ago
How to Prepare your Bioinformatics CV ?
...use of punctuation to open and close sentences, justification, and fonts should be consistent. Readability - The headings should be clear. The font size should be no less than 12 poi...3377 days ago
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Bookmarks
Bioinformatics market in India
Key Topics Covered in the Report: The market size of the Indian Bioinformatics Industry , FY’2007-FY’2013 Market segmentation of India bioinformatics industry by appl...3911 days ago
- The enormous size of the loblolly pine genome having 22 billion base pairs compared to only 3 billion in the human genome. In other words, it is seven times larger than...
3701 days ago
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Files
- perl script analyzing codon usage in an input sequence to evaluate how efficiently it will be expressed in Anopheles gambiae. The input codon usage table derived from highly‐expressed A. gambiae genes is appended below.
1644 days ago
Discussion topics
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3948 days ago
Pages
Bio++ : C Language libraries for your biological need
...aries are as follows:Sequence analysis Sequence and Site objects, with various Alphabet support (DNA, RNA, Proteins, Codons, any 'Word' of a given size).Several containers available...3951 days ago
Check the Size of a directory & Free disk space.
...art using Linux / BioLinux. First: Size of a directory (du) and and s...hine (df). 'du' – Check the size of a directory $ duThis comm...mmand would give you the directory size of the directory /home/david$...isplays a summary of the directory size. It is the simplest way to kn...3706 days ago
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Top-level pages
- 1.Xcode Life Sciences Pvt. Ltd.6B, Eldorado, 112, Nungambakkam High Road,Nungambakkam, Chennai 600034Tamil Nadu, India 2.Mapmygenome™Royal Demeure,HU...
3923 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...s and alternate splicing from RNA-Seq data http://cbil.upenn.edu/beers/BOTTLENECK Bottleneck is a program for detecting recent effective population size reductions from allele data f...3740 days ago
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Wire posts
News
Chromatin: From nucleosomes to chromosomes, 30 April - 2 May 2014
EMBL-EBI announced the Wellcome Trust Scientific Conference Chromatin: From nucleosomes to chromosomes, which continues EMBL-EBI series of meetings focused on fundamen...3928 days ago
2.4 Mb Genome Size for World's Biggest Virus
The genome size of new discovered Pandoraviruses have roughly twice the size of the record-holding Megavirus genomic code. Interestingly only 6 percent of its genes resembled the genes other organisms. I...3926 days ago
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Opportunity posts
Walk-in-Interview @ Indian Agricultural Statistics Research Institute
...ck of the Institute along with their application giving bio-data with attested copies of certificates, degrees, testimonials, etc. and one passport size photograph. Original certi...3871 days ago
Project Fellow @ National Institute of Malaria Research
...igible candidates may walk in for an interview on 15 November 2013 at 11 AM at the above mentioned address along with a copy of CV (with a passport size photograph affixed), photocop...3830 days ago
- +42 more Opportunity posts
Bio-Scripts
Extract a random sequence from a file
...utfile = 'randomoutput.txt'; open my $in_fh, '', $outputfile; my $size = 21; my $count =...ome = length $genome; my @start_points = shuffle(0 .. $len_genome-$size); next unless @start_poin...2918 days ago
- ...://www.biostars.org/p/6156/ my $chr = shift; my $pos = shift; my $size = shift; my $usage = "Example: perl extract_seq_from_ucsc.pl 14 482780 1000\n"; if (! $size) { die "ERROR: You must pas...
2913 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute at TUBITAK MAM Research Center. His research intere...2365 days ago
Tags
Check the Size of a directory & Free disk space.
The amount of databases we bioinformatician deal are just HUGE … In such cases, we always need to check our server for free spaces etc. I planned this article to explains 2 simple commands that most bioinformatician want to know when they start using Linux / BioLinux. First: Size of a dire...Tags: Bioinformatics, Computational Biology, Linux, du, df, Size, File, Usage, Space, Check, Linux
3706 days ago
Quick way to calculate length of multiple fasta file!!
I am using this perl code right nowadays.#!/usr/bin/perl use warnings; use strict;open(FASTA, "<", seq.fa) or die("Can't open\n"); my %singleLineSequences; my $sequence_id; while(){ my $line = $_; chomp($line); if ($line =~ m/^>(\S+)/){ $sequence_id = $1; $s...Tags: Fasta, Size, Length, NGS, Sequence
2869 days ago
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Comments
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
To install BioPerl on a macOS system, you can follow these steps: Open the Terminal app on your macOS system. Install Homebrew if you haven't alrea...425 days ago
Comment on "Basic command-line to run BLAST"
...T has many different parameters that can be adjusted to customize the search. The most important parameters include the e-value threshold, the word size, and the gap penalties....427 days ago
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