Results for "Snakemake"
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snakepipes: A toolkit based on snakemake and python for analysis of NGS data
snakePipes are flexible and powerful workflows built using snakemake that simplify the analysis of NGS data. DNA-mapping* ChIP-seq* RNA-seq* ATAC-seq* scRNA-seq Hi-C...1812 days ago
Snakemake—a scalable bioinformatics workflow engine
Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow.2082 days ago
- Run a pipeline processing fast5s to a consensus in a single command. Recommended fixed "standard" and "fast" pipelines. Interchange basecaller, assembler, and consen...
1940 days ago
Snakemake workflow: dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow for calling small genomic variants.1756 days ago
Sequanix: a dynamic graphical interface for Snakemake workflows
...in the form of Snakefiles (Makefile-like with Python syntax based on snakemake framework) with more than 80...his requires dedicated databases to be downloaded. Sequanix: GUI for snakemake workflows, a GUI for Snakemak...1554 days ago
BlobToolKit: A toolkit for genome assembly QC
...idator for the JSON-based BlobDir format used by BlobTools2 and the Viewer. The BlobToolKit Pipeline is a configurable Snakemake pipeline that automates all s...1545 days ago
sunbeam: A robust, extensible metagenomics pipeline
Sunbeam is a pipeline written in snakemake that simplifies and automates many of the steps in metagenomic sequencing analysis. It uses conda to manage dependencies,...1427 days ago
The Snakemake Wrappers repository
The Snakemake Wrapper Repository is a collection of reusable wrappers that allow to quickly use popular tools from Snakemake rules and workflows. More at https://github.com/snakemake/snakemake-wrappers1000 days ago
- A lesson introducing the Snakemake workflow system for bioinformatics analysis....example workflow. No previous knowledge of Snakemake or workflow systems is required. https://carpentries-incubator.github.io/snakemake-novice-bioinformatics/index.h...
737 days ago
CrowdGO: Machine learning and semantic similarity guided consensus Gene Ontology annotation
...using a meta approach, analyzing the predictions of other tools in order to get an improved precision and recall. Please note that the CrowdGO snakemake workflow is currently only te...720 days ago
