Results for "Snakemake"
Blogs
List of bioinformatics workflow management tools !
...sp;– Hadoop Oozie-based workflow system focused on genomics data analysis in cloud environments. [ paper-2010 | web ] Snakemake – A workflow manag...1152 days ago
Basic Structure of Snakemake Pipeline Run !
...use Snakefile = name of the snakemake “formula” file Note: The default file that snakemake looks for in the current work...python scripts called by the snakemake formula. config.json = json...execute rules of interest. snakemake --dry-run all VS. s...944 days ago
Bookmarks
snakepipes: A toolkit based on snakemake and python for analysis of NGS data
snakePipes are flexible and powerful workflows built using snakemake that simplify the analysis of NGS data. DNA-mapping* ChIP-seq* RNA-seq* ATAC-seq* scRNA-seq Hi-C...1812 days ago
Snakemake—a scalable bioinformatics workflow engine
Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow.2082 days ago
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Wire posts
Opportunity posts
Postdoctoral scientist genome analytics/ genome bioinformatics (m/f/*)
...petence in working in Unix/Linux environments (shell) Strong programming skills (in particular: Python, R, Perl) Experience with using git and snakemake Fluent English language skil...1550 days ago
Immediate opening for senior and lead bioinformatics engineers at MedGenome
...mysql, #oracle, #mongodb (one or more) Past industry experience >= 2 years or equivalent Other skill sets Knowledge of #nextflow and/or #snakemake Basic knowledge of bioinform...711 days ago
Bio-Scripts
- # list sample names & download URLs. sample_links = {"ERR458493": "https://osf.io/5daup/download", "ERR458494":"https://osf.io/8rvh5/download",...
1526 days ago
Install snakemake and activate on conda
$ conda create -c bioconda -c conda-forge -n snakemake snakemake $ conda activate snakemake1548 days ago
- +1 more Bio-Scripts
Tags
Snakemake workflow: dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow for calling small genomic variants.Tags: Snakemake, workflow, dna-seq-gatk-variant-calling, snp
1756 days ago
Snakemake—a scalable bioinformatics workflow engine
Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow.Tags: Snakemake, scalable, bioinformatics, workflow, engine
2082 days ago
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