Software for genome assembly !
List of bioinformatics tools/Software Website References for genome assembly: 1 Falcon https://github.com/PacificBiosciences/pb-assembly 2 Canu assembler http://ca...1357 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for improved consensus accuracy (Ara...dh)● tama (Transcriptome Annotation by Modular Algorithms) – software de...1004 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly method for small to medium-sized genomes. What is d...Genome visualisers and editors:Artemis - http://www.sanger.ac.uk/resources/software/ar...1217 days ago
Common Bioinformatics Interview Questions !
The possibility of an interview for a bioinformatics position in the life sciences ma...and bioinformatics come from? How the heck did you end up in this field? Why programming and scripting ? 2. What is y...1211 days ago
Run bash script in Perl program !
BioPerl is a compilation of Perl modules that can be used to build bioinformatics-relate...e, in the development of source codes, standalone software/tools, and algorithms in bioi...commonly favoured over Perl, some bioinformatics software, s...650 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis, and the other is based on t...is a little troublesome to install, because it depends on a lot of software. wgd depends on the following software B...1168 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastouli...mp; Salzberg, S. L. Genome Biol. 15, R46 (2014). MUMmer: Versatile and open software fo...1060 days ago
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Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignment...890 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional Annotatio...CoCoa -- COefficient of COAncestry software Find information about the a...prokaryotes made easy A web-based software/database system aimed at an i...- Comparative Genomic Hybridization software V...690 days ago