1549 days ago
SvABA: Structural variation and indel detection by local assembly
SvABA is a method for detecting structural variants in sequencing data using genome-wide local assembly. Under the hood, SvABA uses a custom implementation of SGA&n...1517 days ago
1520 days ago
1459 days ago
GRIDSS: the Genomic Rearrangement IDentification Software Suite
GRIDSS is a module software suite containing tools useful for the detection of genomic...s. GRIDSS includes a genome-wide break-end assembler, as well as a structural variation caller for Illumina sequencin...1449 days ago
HNADOCK: a nucleic acid docking server for modeling RNA/DNA–RNA/DNA 3D complex structures
The HNADOCK server is to predict the binding complex structure between two nucleic acid molecules through a hierarchical docking algor...interactions. Users are required to provide the three-dimensional (3D) structure...1431 days ago
1418 days ago
pggb: the pangenome graph builder
This pangenome graph construction pipeline renders a collection of sequences into a pangenome graph (in the variation graph model). Its goal is to...directed and acyclic while preserving large-scale variation. Maintaining local linearity...1330 days ago
RosettaAntibodyDesign (RAbD): A general framework for computational antibody design
RosettaAntibodyDesign (RAbD) is a generalized framework for the design of antibodies, in which a user can easily...ir project needs. The algorithm is meant to sample the diverse sequence, structure...1323 days ago
DnaSP: DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms
DnaSP, DNA Sequence Polymorphism, is a software package for the analysis of DNA polymor...embler RAD-seq software). DnaSP can estimate several measures of DNA sequence variation within and between population...1257 days ago