Results for "Syntax Error"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser...t installed, application will display the following error message. In this example, XML...sure the cpan command is working. Following are the error message when CPAN module is n...3964 days ago
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on compu...so you are responsible for troubleshooting your own errors most of the time. We co...GB/TB of data are having maximum chances of getting errors, so please be careful and al...3722 days ago
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Bookmarks
Bioinformatician’s Pocket Reference !!
It is amusing how brain of bioinformaticians work! Learning a new programming language f...to build our own custom workflows, and thus keeping syntax at our fingertips has become essential.Although Google is best way to get synta...3633 days ago
- You are requested to please bookmark collection of bioinfo...uence format is different, also they have different error type. High quality data is ve...ality statistical details, trimming, filtering, and error correction. Please bookmarks...
3248 days ago
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Files
- DOWNLOAD LINK: https://github.com/BioInf-Wuerzburg/proovread/raw/master/util/blasr-1....I'm running "OPERA-LG_v2.0.5/bin/preprocess_reads.pl" and have the following error: fail to open file './tempor...
2165 days ago
Pages
- Ruby was created by Yukihiro Matsumoto, who wished to create a new language that balanced functional programming wi...reflective, general purpose object-oriented programming language that combines synta...
3962 days ago
- In our day to day research activity, we need to securely copy our data from several to local computer and visa-versa. I am jotting down some of the commonly used SCP...
3716 days ago
- +9 more Pages
Top-level pages
- Data mining, the extraction of hidden predictive information from large databases. Da...Regression - Attempts to find a function which models the data with the least error. Association rule learning -...
3960 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quan...etection and correction of sequencing errors. Kelley et al, Genome Biol 1...bMedCentral Correction of sequencing errors in a mixed set of reads. Sal...e of editing or are simply sequencing errors - the authors stand by their...3794 days ago
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Wire posts
News
Update Genome Workbench 2.7.15 released
NCBI Genome Workbench is an integrated application for vie...dialog to give better diagnostics in case of a user error Graphical Sequence View: PDF...ogenetic Tree Builder Tool: improved diagnostics of errors Multiple Alignment View: op...3735 days ago
- A team from Cold Spring Harbor Laboratory has released an algorithm, called Scalpel,...ce genome, to account for simple sequence repeats that are a regular source of error in indel calling. When Scalpe...
3561 days ago
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ResearchLabs posts
- Gupta laboratory of Natural Information Processing at DA-IICT. Research in our lab cu...and making a computer out of bio-molecules. The key expertise of the lab is in error-correcting codes. We also wor...
3899 days ago
Fun
Golden Rules of Bioinformatics
All constant are variable. Copy and paste is a genetic error. First solve the problem, then write the code. No matter what goes wrong, it will probably look right. Any simple problem can be...3930 days ago
The Best Bioinformatics / Computational Biology Quotes
Bioinformatician are not anti-social; We are just genome friendly. Bioinformaticia...script. Idiot, Go ahead, make my data! Thank god, my genome just compiled. Error message: "Out of space on gen...3734 days ago
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Bio-Scripts
Perl script to count the number of Adenine, Thymine, Guanine and Cytosine in your DNA Sequence
#!/usr/local/bin/perl -w # While executing this script...unt_of_C = 0; $count_of_G = 0; $count_of_T = 0; $errors = 0; foreach $base (@DN...++$count_of_G; } else { print "Error - Unknown base: $base\n";...2930 days ago
Retrieve NCBI GenBank records with a range of accession numbers
#!/usr/bin/perl #FILE: ncbi_search.pl #AUTH: Paul Stot...m/(.*)/is) { die("ESearch returned an error: $1"); } me...UTFILE, ">" . $param{outputFile} ) or die("Error: Cannot open $param{outputFil...2930 days ago
- +32 more Bio-Scripts
Groups
Python is a programming language that lets you work more quickly and integrate your systems more effectively. Pytho...simple but effective approach to object-oriented programming. Python’s elegant synta...3960 days ago
Ruby is a dynamic, reflective, general-purpose object-oriented programming language that combines synta...3934 days ago
Tags
Why the Perl script flash error and print weird lines once change the operating system?
Hi Bioinformatician, I am working on a small script which read a file and extract the gene coordinates. It works fine when I run on linux OS but in Window OS it print some weird sign, and also does not print the expected result. Following are the code for your reference. #!/usr/bin/perluse str...Tags: Perl, Syntax Error, Operating System, Perl script
3936 days ago
Comments
- ...regions : 1. Easy Syntax: Python Syntax are easy to learn and impleme...sp;Readability: Python Syntax are Clear to read since each...able pseudo-code" because its syntax mostly follows the convention...hed and where to correct your error. 7. Batteries Included:...
2533 days ago
