Results for "Tk"
Bio-Scripts
get GC across the entire CDS !
#look at GC across the entire CDS. gffread -x - -g | \ seqtk comp - | \ awk -v OFS="\t" '{ print $1, "0", $2, ($4 + $5) / $2 }'1405 days ago
- (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1228 days ago
- (JitMetaENV) ➜ META_PE conda install -c bioconda seqtk Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1227 days ago
Set up WGD environment using conda !
#Wgd cannot be installed directly with bioconda at present, so it is slightly troublesome to install, because it #depends on a lot of software. wgd depends on the fol...1215 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda csvtk Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1066 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda/label/cf201901 seqtk Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1066 days ago
- ...ne-doc libstdc++-7-doc tcl8.6 tk8.6 gcj-jdk m4-doc libmail-...erl libtcl8.6 libtinfo-dev libtk8.6 libtool libtsan0 libubsan0...m/ubuntu bionic/main amd64 libtk8.6 amd64 8.6.8-4 [693 kB]...viously unselected package libtk8.6:amd64. Preparing to unpac...
1066 days ago
Install grabseqs using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1066 days ago
Downloading mmseqs databases !
...yes https://www.uniprot.org/help/uniref - UniProtKB Aminoacid yes https://www.uniprot.org/help/uniprotkb - UniProtKB/TrEMBL Amin...ath outpath/swissprot: mmseqs databases UniProtKB/Swiss-Prot outpath/swissprot...953 days ago
Installing Covid19 Environment !
...################################################################ | 100% tk-8.6.11 | 3.3 MB...################################################################ | 100% tktable-2.10 | 89 KB...935 days ago
