Results for "Tools"
Bio-Scripts
Set up WGD environment using conda !
#Wgd cannot be installed directly with bioconda at present, so it is slightly troublesome to install, because it #depends on a lot of software. wgd depends on the foll...1197 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...ics-psb-ugent-be.translate.goog/webtools/i-adhore/licensing/ #Follo...s have been written to: /home/urbe/Tools/i-adhore-3.0.01/build (wgd)...ore.dir/levelTwo.cpp.o /home/urbe/Tools/i-adhore-3.0.01/src/SvgWriter...ore.dir/parallel.cpp.o /home/urbe/Tools/i-adhore-3.0.01/src/SvgWriter...1197 days ago
- ...toconf automake autopoint autotools-dev build-essential bzip2-doc...nic-updates/main amd64 icu-devtools amd64 60.2-3ubuntu3.1 [179 kB...nic-updates/main amd64 libpng-tools amd64 1.6.34-1ubuntu0.18.04.2...sly unselected package libpng-tools. Preparing to unpack .../081...
1048 days ago
Install grabseqs using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1048 days ago
Commandline for paired end reads simulation with BBMap !
(JitMetaENV) ➜ mixedSample git:(main) ✗ /home/urbe/Tools/bbmap/randomreads.sh ref=mixed.fa out=reads_BBMAP...ninsert=400 maxinsert=600 gaussian java -ea -Xmx162129m -cp /home/urbe/Tools/bbmap/current/ align2.RandomR...983 days ago
Installing Covid19 Environment !
...######################################################### | 100% setuptools-58.2.0 | 1008 KB | #####...########################################################### | 100% bedtools-2.30.0 | 17.9 MB | ###...917 days ago
Bash script to split multifasta file !
...rintf("chunk%d.fa",n);} print >> file; n++; next;} { print >> file; }' < multi.fasta #Another great solution is genome tools (gt), which you can find here: http://genometools.org/, which has the following...817 days ago
- ...apt install art-nextgen-simulation-tools [sudo] password for neelam:...ackages: art-nextgen-simulation-tools-profiles gsl-ref-psdoc | gsl-...stalled: art-nextgen-simulation-tools libgsl23 libgslcblas0 0 upgr...verse amd64 art-nextgen-simulation-tools amd64 20160605+dfsg-4 [1,681...
658 days ago
Perl script to find inverted repeats !
...usr/bin/perl use strict; use warnings; use Bio::SeqIO; use Bio::Tools::Run::RepeatMasker; my $ge..._seq(); my $seq = $seqobj->seq(); # run RepeatMasker my $rm = Bio::Tools::Run::RepeatMasker->new(); m...418 days ago
- « Previous
- 1
- 2
- 3
- 4
- Next »
