New Machine Learning Packages in R
Machine Learning autokeras v1.0.1: Implements an interface to AutoKeras, an open source software library for automated machine learning. See README for...1509 days ago
Useful links to therapy, disease, drug and drug-target network data:
Useful links to therapy, disease, drug and drug-target network data: DrugBank: a bioinformatics- cheminformatics resource com...1443 days ago
Software for genome assembly !
List of bioinformatics tools/Software Website References for genome assembly: 1 Falcon https://github.com/PacificBiosciences/pb-assembly 2 Canu assembler http://canu.rea...1353 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for impro....pacb.com/blog/young-investigators-share-stellar-science-career-advice-and-bioinformatics-tools-at-smrt-leiden-2021/ &...1001 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembl...trol:Check the qualiy with fastQC.Scripthttps://bioinformaticsonline.com/snippets/view/42540...other contaminants from the reads.Scripthttps://bioinformaticsonline.com/snippets/view/42542...1214 days ago
Common Bioinformatics Interview Questions !
The possibility of an interview for a bioinformatics position in the life sciences...worthwhile to plan for future bioinformatics interview questions. Doing th...rview. The questions from the bioinformatics interview team provide an inc...1207 days ago
Run bash script in Perl program !
BioPerl is a compilation of Perl modules that can be used to build bioinformatics-related Perl scripts. It is u.... IPC::Open2 More at https://bioinformaticsonline.com/snippets/view/42919...on: a2p More help at https://bioinformaticsonline.com/snippets/view/42920...646 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection...hiyang2 012/WGDdetectorhttps://bmcbioinformatics.biomedcentral.com/articles/10...// github.com/arzwa/wgdhttps://bmcbioinformatics.biomedcentral.com/articles/10..., you need to register at http:// bioinformatics.psb.ugent.be /webtools/i-adho...1165 days ago
Frequently used bioinformatics tools for viral genome analysis !
...Keane JA, Kellam P, Otto TD. Bioinformatics. 2015 Jul 15;31(14):2374-6. doi: 10.1093/bioinformatics/btv120. Epub 2015 Feb 28. Ad...z, A. & Grabowski, S. BMC Bioinformatics 14, 160 (2013). Kraken: Krak...t and SAMtools. Li, H. et al. Bioinformatics 25, 2078-9 (2009). Trimmomat...1056 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignment (B...886 days ago