Results for "UCSC"
Blogs
List of cancer genomics research web resources !
Major web resources for cancer genomics research CGHub https://cghub.ucsc.edu/ Comprehensive data reposito...al/ Graphical summaries; gene alteration; processed data; visualization UCSC Cancer Genomics Browser https...2327 days ago
- ...om one genome assembly to another genome assembly In most scenarios, we have known genome positions in NCBI build 36 (UCSC hg 18) and hope to lift them over to NCBI build 37 (UCSC hg19). (2) Convert dbSNP rs...
2167 days ago
Bookmarks
Public Databases for Bioinformatics !
...e human genome version hg38 was obtained from http://hgdownload.cse.ucsc.edu/goldenPath/hg38/bigZips/h...e human genome version hg19 was obtained from http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/h...1146 days ago
Encode sequencing data freely available to download and use for academic means
...hat interact with DNA, including modified histones and transcription factors, followed by sequencing (ChIP-Seq). More information: https://genome.ucsc.edu/ENCODE/pilot.html3713 days ago
- +15 more Bookmarks
Pages
- I found several useful bioinformatics articles which exaplain, define and elaborate the bioinformatics in scientific way. Therefore, instead of writting it again...
3928 days ago
Virtual Bioinformatics Online Tutorial
...06) - Israel Institute of Technology CSE 590BI - Computational Biology, University of Washington MBB 447b3 (747b3) Classes - Yale UCSC School of Engineering- Class...3928 days ago
Top-level pages
- ...edu/biomed/TUTORIALS/SEQUENCE/MULTIPLE/tutorial.html•http://www.cse.ucsc.edu/research/compbio/ Hmms...ml•http://alfredo.wustl.edu/ismb96/abs/p02.html•http://www.cse.ucsc.edu/research/compbio/html_for...
3953 days ago
Bioinformatics Courses Around the World
Bioinformatics Courses around the world Here is the list Bioinformatics courses offered around the world. Reasons for constructing this page are: To show the exten...3950 days ago
- +6 more Top-level pages
Wire posts
News
High Density Sheep SNP Genotyping Chip released!!!
...ve trait loci, and comparative genetic studies. The BeadChip was developed in collaboration with leading ovine researchers from AgResearch, Baylor UCSC, CSIRO, and the USDA as part...3904 days ago
- ...ene set including manual annotation from HAVANA New species: Vervet-African green monkey Imported Transcript Support Levels (TSLs) from UCSC for human and&...
3507 days ago
- +1 more News
Opportunity posts
- ...Tophat, Cufflinks, AvadisNGS, CLC Genomics Workbench, Galaxy, BaseSpace, Trinity Statistics: Microsoft Excel and R. Database: MySQL Genome Browser: UCSC, Ensemble, IGV, IGB Motif Ana...
3172 days ago
ResearchLabs posts
- In a lot of my work in bioinformatics, I have been using hidden Markov models (HMMs). As a postdoc with David Haussler at UCSC we developed the so-called profile HMMs (refs). Since t...
3877 days ago
Video
- https://genome10k.soe.ucsc.edu The Genome 10K project aims to assemble a genomic zoo—a collection of DNA sequences representing the genomes of 10,000 vertebrate species, approxi...
3575 days ago
Bio-Scripts
- ...th; use XML::XPath::XMLParser; # Use DAS of UCSC to fetch specific sequence by...my $usage = "Example: perl extract_seq_from_ucsc.pl 14 482780 1000\n"; if (...L for the DAS server. Example: # http://genome.ucsc.edu/cgi-bin/das/calJac3/dna?s...
2917 days ago
- #!/usr/bin/env Rscript library(RCircos) # usage: Rscript make_circos.r # parse args args = commandArgs(trailingOnly=TRUE) sv.file
306 days ago
Tags
Encode sequencing data freely available to download and use for academic means
In Encode, regulatory elements investigated via DNA hypersensitivity assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that interact with DNA, including modified histones and transcription factors, followed by sequencing (ChIP-Seq). More information: h...Tags: Encode, UCSC, genome browser, Sequencing, RNA-Seq, Chip-Seq, Epigenomics, Methylation, histone modification, regulatory elements, HMM
3713 days ago
- +5 more Tags
Comments
Comment on "Installing BLAT on Linux !"
...w for Unix users is via Git following the instructions at: http://genome.ucsc.edu/admin/git.html Or, fetch...the entire source in a single file: rsync -azvP rsync://hgdownload.soe.ucsc.edu/genome/admin/jksrc.zip ./...1217 days ago
Comment on "Biological databases !"
Chromosomes here https://hgdownload.cse.ucsc.edu/goldenpath/hg38/chromosomes/1550 days ago
- +4 more Comments
