3945 days ago
Computer simulation of genetic mechanism !!
...mulator of Rare Varaints (srv) is a simulator for the simulation of the introduction and evolution of (rare) genetic variants. http://simupop.sourceforge.net/cookbook/simurarevariants SUP SLINK/FastSL...2975 days ago
RNA Sequencing Helps Identify Functional Variants from GWAS
For Alzheimer’s and other complex disorders, mining the genome for disease-associated variants is no longer the obstacle. The challenge nowadays is figuring out how the identifie...3817 days ago
3653 days ago
2798 days ago
Genome Assembly Tools and Software - PART2 !!
...0 – Detection and Assembly of Insertion VariantsMindTheGap is a software...forms detection and assembly of DNA insertion variants in NGS read datasets with res...oftware uses a simple error correction, viral variants assembling based on maximum-b...2686 days ago
List of bioinformatics open source projects/software.
...-seq. GeneTalk http://www.gene-talk.de/ Tool for filtering sequence variants in VCF files. Network for sci...ertise and knowledge exchange. Database of annotations aboute sequence variants with clinically relevant info...3757 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...mulator of Rare Varaints (srv) is a simulator for the simulation of the introduction and evolution of (rare) genetic variants. http://simupop.sourceforge.net/cookbook/simurarevariantsSUP SLINK/FastSLINK utility pr...3738 days ago
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3626 days ago
Structural polymorphism analysis from NGS data
...rotein expression and phenotypic adaptation. The successful candidate will be in charge of the detection of polymorphisms including structural variants, of the comparison of multipl...3949 days ago
3949 days ago
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3873 days ago
Dr. Ken Buetow: IS & Personalized Medicine Lecture-Part 1
...n which it has developed. These technologies identify the millions of variants present in normal individuals...oped approaches to efficiently and accurately computationally identify variants. More recently, the analyti...3871 days ago
2076 days ago
Samtools commands for bioinformatician !
...files samtools index sal_sej_sorted.bam.bam ### identifying genome variants (mpileup command) # -g : out...calling snp and indels # -c : find snp # -v : output only potential variants bcftools view -c -v sal_vars...1603 days ago
3953 days ago
Comment on "Coronavirus Resources !"
...Variant Classification scheme that defines three classes of SARS-CoV-2 variants: Variant of Interest Vari...rsting piece of information https://www.cdc.gov/coronavirus/2019-ncov/variants/variant-info.html961 days ago
Comment on "Calling variants in non-diploid systems"
FreeBayes is widely used for calling variants in diploid systems. However, it can also be used for calling variants in pooled samples where the n...1044 days ago