Results for "Variation"
Blogs
Dynamic chromosome breakpoints !!!
...segments of maternal and paternal chromosomes to form hybrid chromosomes have some evolutionary importance and considered as a driver of genetic variation. Moreover, the chromosome bre...3546 days ago
Computer simulation of genetic mechanism !!
...large diploid populations. http://www.ebi.ac.uk/projects/bargen FIGG FIGG is a genome simulation tool that uses known or theorized variation frequency, per a given fragme...2968 days ago
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Bookmarks
Next Generation Sequencing (NGS) Tutorials
...==== NGS data analysis pipelines Detecting and annotating genetic variations using the HugeSeq pipeline&n...eration Sequence 10.1186/1471-2164-12-285 A framework for variation discovery and genotyping usin...3481 days ago
Junk part of the human genome unlocked
...s researchers originally had believed " Simple Quantitative PCR Approach to Reveal Naturally Occurring and Mutation-Induced Repetitive Sequence Variation on the Drosophila Y Chromosom...3489 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
...ising the three primary parameter options (K, -exp_cov, -cov_cutoff) for the Velvet de novo sequence assembler. Assemblet 0.1 – Antigenic Variation AssemblerAssemblet is a...2679 days ago
Awesome perl frameworks, libraries and software - PART 2
...tyle. Farow/hexchat-scripts - Perl scripts for HexChat exercism/xperl5 - Exercism Exercises in Perl 5 Ensembl/ensembl-variation - The Ensembl Variation Perl API and SQL schema eiro...2488 days ago
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Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...nce sequence of a gene of interest] Detecting and annotating genetic variations using the HugeSeq pipeline....t al, Genome Res 20(9):1297-303, 2010. PubMedCentral A framework for variation discovery and genotyping usin...3773 days ago
Commercial and public next-gen-seq (NGS) software
...Linux/Alpha. SOCS - Aligns SOLiD data. SOCS is built on an iterative variation of the Rabin-Karp string sear...; and easy visualization of putative single nucleotide and structural variation. From the Sanger Centre. MapV...3512 days ago
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Wire posts
News
- Key finding: rs1426654 SNP of SLC24A5 gene is decider of skin pigmentation variation in South Asia rs1426654-A allele is widely spread throughout the Indian subcontinent ...
3820 days ago
- ...for scientists and institutions focused on the discovery of genotypic variation to enable a deeper understand...high-coverage sequencing, delivering a comprehensive catalog of human variation within and outside coding reg...
3756 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
...iming at understanding and improving the adaptive capacity of agroecosystems it will be critical to establish a link between sequence variation, functional variation, gene/protein expression and...3942 days ago
- ...coli, will be exploited to better understand two complex genetic traits: ethanol and high temperature tolerance. For both organisms both natural variation and the outcomes of experimen...
3942 days ago
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ResearchLabs posts
- ...t of understanding in human disease. Research Area: Analysis of Next Generation sequence data in cancer Methods for analysis of structural variation in cancer genomes Next Gener...
3941 days ago
- ...dical knowledge. We are particularly interested in understanding how the response to chemical exposure is modulated by genetic and physiological variation among individuals and how thi...
3941 days ago
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Video
Dr. Ken Buetow: IS & Personalized Medicine Lecture-Part 1
...ely computationally identify variants. More recently, the analytic approaches have been extended to systematically identify insertion/deletion variation, translocations, and rearrang...3864 days ago
Bio-Scripts
- ...(BETA Tool) (Internal) Extracts evidence of structural variations from reads FindBreakpoi...of genomic regions that may harbor structural variants StructuralVariationDiscoveryPipelineSpark (BET...
2069 days ago
Pack a perl program with their dependencies on Ubuntu !
...) Link to working demo:... Jit@jit.aber SvABA: Structural variation and indel detection by local assemblyBy Jit 6 days ago SvABAStructuralvariationindeldetectionlocalassembly...1505 days ago
Groups
BioInformatics National Certification (BINC)
...an universities, Government and private institutions are involved in imparting courses in Bioinformatics in India. However, there exists a large variation in the course contents, train...3916 days ago
Tags
Software and Tools to detect structure variation with long reads !!
Uncovering the connection between genetics and heritable diseases requires an approach that looks at all the variant bases and types in a genome. While a PacBio de novo assembly resolves the most novel SV variants. 8-10X PacBio coverage of single genomes or trios reveals triple the SVs ...Tags: Bioinformatics, LR, Long, Reads, Tools, Software, Pacbio, Genome, DNA, Sequence, NGS, SV, Variation, Structure
2601 days ago
Comments
- ...ed reads and mapped unique reads, rRNA reads, transcript-annotated reads, strand specificity), coverage (like mean coverage, mean coefficient of variation, 5’/3’ coverage,...
2131 days ago
Comment on "Structural variation: the hidden genomic treasure"
PhD thesis and useful material on Structure Variation http://paduaresearch.cab.unipd.it/4930/1/tesi_dottorato_versione_finale.pdf2696 days ago
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