Dynamic chromosome breakpoints !!!
...segments of maternal and paternal chromosomes to form hybrid chromosomes have some evolutionary importance and considered as a driver of genetic variation. Moreover, the chromosome bre...3691 days ago
Computer simulation of genetic mechanism !!
...large diploid populations. http://www.ebi.ac.uk/projects/bargen FIGG FIGG is a genome simulation tool that uses known or theorized variation frequency, per a given fragme...3113 days ago
Next Generation Sequencing (NGS) Tutorials
...==== NGS data analysis pipelines Detecting and annotating genetic variations using the HugeSeq pipeline&n...eration Sequence 10.1186/1471-2164-12-285 A framework for variation discovery and genotyping usin...3626 days ago
Junk part of the human genome unlocked
...s researchers originally had believed " Simple Quantitative PCR Approach to Reveal Naturally Occurring and Mutation-Induced Repetitive Sequence Variation on the Drosophila Y Chromosom...3634 days ago
Genome Assembly Tools and Software - PART2 !!
...ising the three primary parameter options (K, -exp_cov, -cov_cutoff) for the Velvet de novo sequence assembler. Assemblet 0.1 – Antigenic Variation AssemblerAssemblet is a...2824 days ago
Awesome perl frameworks, libraries and software - PART 2
...tyle. Farow/hexchat-scripts - Perl scripts for HexChat exercism/xperl5 - Exercism Exercises in Perl 5 Ensembl/ensembl-variation - The Ensembl Variation Perl API and SQL schema eiro...2633 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...nce sequence of a gene of interest] Detecting and annotating genetic variations using the HugeSeq pipeline....t al, Genome Res 20(9):1297-303, 2010. PubMedCentral A framework for variation discovery and genotyping usin...3918 days ago
Commercial and public next-gen-seq (NGS) software
...Linux/Alpha. SOCS - Aligns SOLiD data. SOCS is built on an iterative variation of the Rabin-Karp string sear...; and easy visualization of putative single nucleotide and structural variation. From the Sanger Centre. MapV...3657 days ago
3965 days ago
3901 days ago
Structural polymorphism analysis from NGS data
...iming at understanding and improving the adaptive capacity of agroecosystems it will be critical to establish a link between sequence variation, functional variation, gene/protein expression and...4087 days ago
4087 days ago
4086 days ago
4086 days ago
Dr. Ken Buetow: IS & Personalized Medicine Lecture-Part 1
...ely computationally identify variants. More recently, the analytic approaches have been extended to systematically identify insertion/deletion variation, translocations, and rearrang...4009 days ago
2214 days ago
Pack a perl program with their dependencies on Ubuntu !
...) Link to working demo:... Jit@jit.aber SvABA: Structural variation and indel detection by local assemblyBy Jit 6 days ago SvABAStructuralvariationindeldetectionlocalassembly...1650 days ago
BioInformatics National Certification (BINC)
...an universities, Government and private institutions are involved in imparting courses in Bioinformatics in India. However, there exists a large variation in the course contents, train...4061 days ago
2276 days ago
Comment on "Structural variation: the hidden genomic treasure"
PhD thesis and useful material on Structure Variation http://paduaresearch.cab.unipd.it/4930/1/tesi_dottorato_versione_finale.pdf2841 days ago