Results for "Various bioinformatics software"
Bio-Scripts
# To follow these instructions, we'll assume your system admins have already installed thes...esn't need to be your home folder. Put it wherever you want to maintain such software: export PERL_BASE="$HOME/per...2143 days ago
Installing ggplot2 and its dependencies on Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter/minidot/bin$ sudo R [sudo] password for jit:...r Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO...1549 days ago
Installing docker for Bioinformatics on Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ sudo apt-get remove docker docker-engine docker.io containerd runc Reading package lists... Done Building dependency tree R...1512 days ago
Pack a perl program with their dependencies on Ubuntu !
...test script web.pl at https://bioinformaticsonline.com/snippets/view/41440...toConTAMPR/bin$ ./web https://bioinformaticsonline.com #It return thi...Evaluation of genome assembly software based on long readsBy BioStar...Evaluationgenomeassemblysoftwarelongreads TGS technolo...1510 days ago
Commands to install conda in Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ mkdir jittmp jit@jit-HP-Pro-33...NY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSI...o contains Visual Studio Code software binaries from Mi crosoft Cor...SHA256 and RIPEMD160), a nd various encryption algorithms (AES, DE...1510 days ago
Set up WGD environment using conda !
#Wgd cannot be installed directly with bioconda at presen...o install, because it #depends on a lot of software. wgd depends on the following software #BLAST #MCL #MUSCLE/MAFF...th ABSOLUTELY NO WARRANTY; This is free software, and you are welcome to redis...1203 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
#Need to download i-adhore-3.0.01.tar.gz from https://wdiceryfd4rjn74bjhhtz2k5di--bioinformatics-psb-ugent-be.translate.goog/webtools/i-adhore/licensing/ #Follow these steps (wgd) ➜ i-adh...1203 days ago
Bash script to check installed bioinformatics program !
allTools=(bwa mummer trimomatic) decFlag=0; for name in ${allTools[@]}; do #echo "enter your package name" # read name dpkg -s $name &> /dev/null...1045 days ago
Download desire version of Blast software !
#Create a directory and wget it wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.6.0/ncbi-blast-2.6.0+-x64-linux.tar.gz #unpacking blast tar -zxvf ncbi-bl...941 days ago
Installing manadatory software for websites hosting !
#See all the installed apt list --installed apt list #Installing Apache #To install Apache, install the latest meta-package apache2 by running: sudo apt update...915 days ago
