1139 days ago
Software and Tools to detect structure variation with long reads !!
...V calls using tiled local assemblies across the entire genome instead of "signature" regions Genotyping of SVs with Illumina paired-end reads from WGS samples More at https...2607 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
...ads LQSDALIGNER, Celera OLC Nanocorrect, Nanopolish correctorhttps://github.com/jts/nanopolish PBcRHGAP or BLASR, Celera OLC PBcR correctorhttp://wgs-assembler.sourceforge.net/wik...2319 days ago
3652 days ago
3233 days ago
Genome Assembly Tools and Software - PART2 !!
...erred haplotypes. RePS 2.0 – WGS Sequence AssemblerRePS (...t-masked Phrap with scaffolding), a WGS sequence assembler, that expl...ting assemblies. Fermi 1.1 – WGS de novo Assembler based on th...t Substitution Sequencing Errors in WGS Data Sets Quake is a pa...2685 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...customizable aligners (Bowtie, Bowtie 2, BWA, GSNAP, Isaac 2, SHRiMP 2, STAR, TMAP, TopHat and TopHat 2) Applications for RNA-Seq, Small RNA-Seq, WGS/WES, Pathway enrichment, Fusi...2908 days ago
Genome Assembly Tools and Software - PART1 !!
...ssembler 8.3 – Whole Genome Shotgun Assembler Celera Assembler (wgs-assembler) is scientific soft...Phusion 2.1c – Assembly Genome Sequences from Whole Genome Shotgun(WGS) Reads Phusion is a softwa...2685 days ago
Webinar on 'An integrated RNA and DNA approach to unravel genetic regulation in cancer'
...stract Whole exome DNA sequencing (WES) or whole genome DNA sequencing (WGS) allows detection of mutation...erse transcriptional aberrations that can be missed in a stand-alone WES/WGS analysis. An integration of D...3370 days ago
GenBank release 257.0 is now available!
...llion records. The current release has: 246,119,175 traditional records containing 2,112,058,517,945 base pairs of sequence data 2,631,493,489 WGS records containing 22,294,446...255 days ago
Senior Research Fellow at NIT, Rourkela
...rable Qualifications/ Experiences: Experience of Programming in PERL,R, Python, Unix and Visual Studio + Knowledge in NGS data analysis work flows ,WGS and statistical packages such...3566 days ago
Sr.Bioinformatics Analyst (NGS) at Ocimum Biosolution
...t have minimum 2+ years of hands on experience in NSG data analysis such as RNA-Seq,Exome-Seq ,Chip-Seq and downstream analysis. 7. Knowledge in WGS ,WES, Targeted re-sequencing,...3458 days ago
2074 days ago
Pack a perl program with their dependencies on Ubuntu !
...tes is an R package implementing a network approach to identify horizontal gene co-transfer (HGcoT) between bacteria using whole-genome sequencing (WGS) data. It is particularly use...1510 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
...-to-map regions like pseudogenes and segmental duplications). GIAB is also exploring expanding to additional samples consented for release of WGS and redistribution of commerc...1559 days ago
Comment on "Want to Know which genome assembler rule the world ?"
Canu Assembler is my personal favourate.Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequelor Oxford Nanopore MinION).1949 days ago