Results for "WGS"
Users
Skills: WGS1132 days ago
Blogs
Software and Tools to detect structure variation with long reads !!
...V calls using tiled local assemblies across the entire genome instead of "signature" regions Genotyping of SVs with Illumina paired-end reads from WGS samples More at https...2600 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
...ads LQSDALIGNER, Celera OLC Nanocorrect, Nanopolish correctorhttps://github.com/jts/nanopolish PBcRHGAP or BLASR, Celera OLC PBcR correctorhttp://wgs-assembler.sourceforge.net/wik...2313 days ago
Bookmarks
- ...ine; and often allow more control over branching and iteration logic. WGS/exome GATK-based variant call...esigned for human (or similar) data. The master branch is configured for WGS data; there is an exome branc...
3645 days ago
- ...easy and flexible manner to perform both simple and complex bioinformatics tasks. The next-generation sequencing included whole genome sequencing(WGS), transcriptome sequencing (w...
3226 days ago
- +12 more Bookmarks
Pages
Genome Assembly Tools and Software - PART2 !!
...erred haplotypes. RePS 2.0 – WGS Sequence AssemblerRePS (...t-masked Phrap with scaffolding), a WGS sequence assembler, that expl...ting assemblies. Fermi 1.1 – WGS de novo Assembler based on th...t Substitution Sequencing Errors in WGS Data Sets Quake is a pa...2678 days ago
Top-level pages
List of Bioinformatics Software Tools for Next Generation Sequencing
...customizable aligners (Bowtie, Bowtie 2, BWA, GSNAP, Isaac 2, SHRiMP 2, STAR, TMAP, TopHat and TopHat 2) Applications for RNA-Seq, Small RNA-Seq, WGS/WES, Pathway enrichment, Fusi...2901 days ago
Genome Assembly Tools and Software - PART1 !!
...ssembler 8.3 – Whole Genome Shotgun Assembler Celera Assembler (wgs-assembler) is scientific soft...Phusion 2.1c – Assembly Genome Sequences from Whole Genome Shotgun(WGS) Reads Phusion is a softwa...2678 days ago
- +3 more Top-level pages
Wire posts
News
Webinar on 'An integrated RNA and DNA approach to unravel genetic regulation in cancer'
...stract Whole exome DNA sequencing (WES) or whole genome DNA sequencing (WGS) allows detection of mutation...erse transcriptional aberrations that can be missed in a stand-alone WES/WGS analysis. An integration of D...3363 days ago
GenBank release 257.0 is now available!
...llion records. The current release has: 246,119,175 traditional records containing 2,112,058,517,945 base pairs of sequence data 2,631,493,489 WGS records containing 22,294,446...249 days ago
Opportunity posts
Senior Research Fellow at NIT, Rourkela
...rable Qualifications/ Experiences: Experience of Programming in PERL,R, Python, Unix and Visual Studio + Knowledge in NGS data analysis work flows ,WGS and statistical packages such...3560 days ago
Sr.Bioinformatics Analyst (NGS) at Ocimum Biosolution
...t have minimum 2+ years of hands on experience in NSG data analysis such as RNA-Seq,Exome-Seq ,Chip-Seq and downstream analysis. 7. Knowledge in WGS ,WES, Targeted re-sequencing,...3451 days ago
- +3 more Opportunity posts
Bio-Scripts
- ...Collects quality yield metrics from SAM/BAM/CRAM file(s). CollectRawWgsMetrics (Picard)...te (spanning all samples) metrics from the provided VCF file CollectWgsMetrics (Picard)...
2067 days ago
Pack a perl program with their dependencies on Ubuntu !
...tes is an R package implementing a network approach to identify horizontal gene co-transfer (HGcoT) between bacteria using whole-genome sequencing (WGS) data. It is particularly use...1503 days ago
Comments
Comment on "Genome in a Bottle (GIAB) Consortium"
...-to-map regions like pseudogenes and segmental duplications). GIAB is also exploring expanding to additional samples consented for release of WGS and redistribution of commerc...1552 days ago
Comment on "Want to Know which genome assembler rule the world ?"
Canu Assembler is my personal favourate.Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequelor Oxford Nanopore MinION).1942 days ago
