Comment on "Short-read assembly using Spades !"
Short-read assembly is the process of constructing a genome sequence from a large number of...g reads. SPAdes (St. Petersburg genome assembler) is a popular softw...e directory where the assembled genome will be saved, "forward_reads...s and accuracy of the assembled genome by com...425 days ago
425 days ago
Comment on "Short-read assembly using Spades !"
SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can assemble rea...le named contigs.fasta. You can view the contigs using a text editor or a genome browse...430 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Genome synteny analysis is the comparison of the genomic structure...ps to follow for conducting a genome synteny analysis: Choose the...logical interest. Obtain the genome sequences: Download the genom...orthologous genes between the genomes using tools such as OrthoFin...433 days ago
Comment on "CovCal: Coverage / Read Count Calculator"
Sequencing coverage is defined as the average number of reads that covers each base of the reference genome. Estimating the sequenci...s the sequencing coverage G is the length of the genome L is...593 days ago
Comment on "Genome assembly training tutorial at Galaxy !"
Understandinng genome assembly processes https://academic.oup.com/bfg/article/15/1/1/1741842962 days ago
Comment on "Estimate Genome Size with Jellyfish and R"
Jellyfish manual at http://www.genome.umd.edu/docs/JellyfishUserGuide.pdf991 days ago
1111 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Bioinformatics Journals Ranks from Google Scholar 1: Bioinformatics Journals (the mos...(4.780 :: 5.081) Frontiers in Genetics G3-Genes Genomes Genetics (3.198 :: 3.50...nes (3.242) Genetics (5.963 :: 5.241) Genome (...1114 days ago
1156 days ago