3943 days ago
List of motif discovery tools !
...rediction Conduct in silico sumoylation sites prediction. SWAKK -- a web server for detecting positive selection in proteins using a sliding window substitution rate analysis D...1997 days ago
Next Generation Sequencing (NGS) Tutorials
...netic-inference.co.uk/blog/2009/04/basics-sequencing-dna-part-1/ http://www.genetic-inference.co.uk/blog/2009/08/basics-sequencing-dna-part-2/ A window into third-generation sequenc...3491 days ago
Trimmomatic: A flexible read trimming tool for Illumina NGS data
...ed.fq.gz ILLUMINACLIP:TruSeq3-PE.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 This will per...below quality 3) (TRAILING:3) Scan the read with a 4-base wide sliding window, cutting when the average qua...2946 days ago
Keep Your Important SSH Session Running when You Disconnect from Server !!!
...mp; exit), but following are the ones I use the most. Screen is like a window manager for your console. It...session, or create a new one if none existsscreen -D -rTo create a new window inside of a running screen se...3707 days ago
Frequent words problem solution by Perl
...my $name (keys %myHash){ print "$name " if $myHash{$name} == $max;}sub kmerMatch { #Check the exact matching kmers with sliding windowmy ($string, $myStr, $kmer)=@_...3256 days ago
Apps for Busy Bioinformatics Researchers !!!
...chosen organisms, such as species, compute summary statistics, and present the results. Names of two taxa to be compared are entered in the search window and the results are presented...3545 days ago
Awesome perl frameworks, libraries and software - PART 1
... - online perl testing! tsee/ZeroMQ-Perl - Perl interface to 0MQ2 trizen/obmenu-generator - A fast menu generator for the Openbox Window Manager. rjbs/App-Cmd -...2493 days ago
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Install BLAST in Ubuntu/Linux and Window !
#On ubuntu sudo apt-get install ncbi-blast+ #Ubuntu Conda installation conda install -c bioconda blast #Windows installation First: Download ftp://ftp.ncbi.nlm.nih.gov/blas...1150 days ago
Perl program to implement sliding window !
#!/usr/bin/perl -w my $filename = 'data.txt'; open(my TR, '2918 days ago
Is Linux OS necessary for Bioinformatics? If yes which one is the best for NGS analysis.
I am currently working on NGS, and looking for a nice OS to handle huge amount of genomics data with an ease. Someone suggested me that Window OS will be a bad idea to use for NGS analysis. I need your valuable suggestion for the best. ThanksTags: NGS, OS, Linux, Window, Best
3627 days ago
Comment on "Far Manager Commands and Links !"
...nting files F6- here you can create a link (shortcut) to a file or folder F7- file search F8- display command history F9- resizing the program window F10- folder search F11- dis...944 days ago
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