Comment on "Calling variants in non-diploid systems"
...in pooled samples where the number of samples is not known. This is the exact scenario we have here: in...ltiple mitochondrial (or bacterial or viral) genomes, but we do not know exactly how many. Thus we will u...1058 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Bioinformatics Journals Ranks from Google Scholar 1: Bioinformatics Journals (the most recent Impact Factor :: 5-year Impact Factor) WIREs Computational Molecula...1119 days ago
Comment on "List of non-commercial NGS genotype-calling software"
...the Genomic Rearrangement IDentification Software Suite. [ paper-2017 ]smoove – structural variant calling and genotyping with existing tools, but,smoothly.1157 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
# envname is the name of your (existing) conda env conda activate envname # cpanm is available on either conda-forge or # bioconda, so add conda-forge (or look up # how to set...1196 days ago
Comment on "Installing BLAT on Linux !"
Get the code. The best way to do this now for Unix users is via Git following the instructions at: http://genome.ucsc.edu/admin/git.html Or, fetch the entire source in a single fi...1225 days ago
Comment on "Letter of motivation for bioinformatics applicants !"
...ons for picking this individual Ph.D. program. Provide the info regarding your previous scholastic and professional experience. You can also include teaching and research experience, work outside an acad...1234 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Journal of Integrative Bioinformatics https://www.degruyter.com/view/journals/jib/jib-overview.xml?tab_body=overview1236 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
Check the perl module Test if dependencies are met by running this perl one-liner: perl -e "use JSON::XS;"1249 days ago
Comment on "URMAP, an ultra-fast read mapper"
...d reads because decompression is typically more expensive than the additional fi...o the pipe if needed). The reference genome index filename is given by the -ufi...specifies a variant mapping algorithm which is ~3x faster but somewhat less accu...1298 days ago
Comment on "Sibelia: A comparative genomics tool"
...e same folder with "Sibelia" executable. Directory "examples/Sibelia" contains two s...results (poor coverage, for example), try to set simplifica...File name = "coverage_report.txt". The file describes port...he details, please see the next section and [1]. The "loose"...1299 days ago