Results for "bacterial"
Blogs
...ic approach by Behzadi and Vingron in an easy-to-use program. Such method could be applied to reconstruction of partial homologous units such as bacterial operons or protein complexes....2523 days ago
List of Research Institutes in India (Biological Sciences/ Biotechnology)
...Gruhakalpa, 5-4-399/B, Nampally, Hyderabad - 500 001.Email: director@cdfd.org.inWeb: www.cdfd.org.in/Research Areas: Automated genome analysis, bacterial genetics, cancer biology, cel...2357 days ago
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Bookmarks
shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also su...1212 days ago
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotation and metagenomics. However, the constructi...3567 days ago
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Pages
Bio++ : C Language libraries for your biological need
...on of Mitochondrial Genetic Diversity in Mammals. Genetics. 2008 January; 178(1): 351-361.Galtier N. A model of horizontal gene transfer and the bacterial phylogeny problem. Syst Biol....3940 days ago
Awesome perl frameworks, libraries and software - PART 2
...t::Unicode. It takes UTF-8 data and tries to represent it in US-ASCII characters. aleimba/bac-genomics-scripts - Collection of scripts for bacterial genomics aichaos/rivescript-...2487 days ago
Top-level pages
List of Bioinformatics Software Tools for Next Generation Sequencing
...esigned to run on “nux-like platforms” Input: BAM Output: VCF KvarQ Description: in silico genotyping for selected loci in bacterial genome, written in Python and...2901 days ago
Genome Assembly Tools and Software - PART1 !!
...er seeks to close the gap from each edge in an iterative manner. From a good number of tests we see the program yields excellent results both on bacterial en eukaryotic datasets....2678 days ago
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Wire posts
News
100K Foodborne Pathogen Genome Project
...nisms to its public database at the National Center for Biotechnology Information. 100K Genome Project, aims to sequence the genomes of 100,000 bacterial and viral genomes. http://10...3916 days ago
Opportunity posts
EMBL Postdoc position in Bacterial Gene Gain Loss
...s Department, Cambridge University) under the EMBL-EBI / Cambridge Computational Biomedical Postdoctoral Fellowship scheme. The project is on bacterial gene gain and loss and emergi...3173 days ago
JRF @ BHARATHIDASAN UNIVERSITY
...NIVERSITY, TIRUCHIRAPPALLI-620 024 WALK-IN-INTERVIEW FOR JUNIOR RESEARCH FELLOWSHIP Project title: Structural and Functional Evolution of Bacterial ADP-ribosylation Superfamily–...3885 days ago
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ResearchLabs posts
- ...fields of Bioinformatics, Biotechnology, Data Mining, and Information Retrieval. The group's research projects includes Comparative Genomics of Bacterial genomes, Metagenomics, Genomi...
3189 days ago
- ...plays important roles in our physiology, immunity, metabolism and sustenance. Within the human gastrointestinal tract alone there are over 1,000 bacterial species, which amounts to app...
2911 days ago
Video
- ...genetics include the development of genetic methods for understanding biological functions and the discovery of the functions of many yeast and bacterial genes. In 1980, Botstein and...
3866 days ago
TEDxCaltech - J. Craig Venter - Future Biology
...n genome and in 2007 for the first complete diploid human genome. In 2010 he and his team announced success in constructing the first synthetic bacterial cell. His present work focuse...3855 days ago
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Tags
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED database and provides detailed annotation and pathway analysis. Takes several hours per genome but I think this is the best way to get a high quality annotation (if you have only a few genomes to annotate). Pr...Tags: Tools, bacterial, whole, genome, annotation, prokaryotic, genes
2324 days ago
Comments
Comment on "Calling variants in non-diploid systems"
...oled samples where the number of samples is not known. This is the exact scenario we have here: in our sample we have multiple mitochondrial (or bacterial or viral) genomes, but we do...1036 days ago
Comment on "Sibelia: A comparative genomics tool"
...ATH" environment variable or input files are in the same folder with "Sibelia" executable. Directory "examples/Sibelia" contains two sets of bacterial genomes. The easiest way to...1278 days ago
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