QuartataWeb: user-friendly server developed for polypharmacological and chemogenomics analyses.
...pening the way to design repurposable drugs, new chemicals, or polypharmacological treatments. https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btaa210/58133331500 days ago
Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
...inerized workflow system, which will be free from dependency, installation, and execution problems typically associated with other open-source bioinformatics solutions. This will maximize...1492 days ago
PPAI: a web server for predicting protein-aptamer interactions
PPAI can query aptamers and proteins, predict aptamers and predict protein-aptamer interactions in batch mode precisely and efficiently, which would be a novel bioinformatics tool for the research of protein-aptamer interactions. PPAI web-server is freely available at http://39.96.85.9/PPAI1428 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
2/3/2020: Now published by Bioinformatics. 11/3/2019: V 0.61, Improve graphical visualization (thanks to reviewers). Interactive networks and much more. 5/20/2019: V.0.60, Annotati...1437 days ago
PhiSpy: PhiSpy identifies prophages in Bacterial (and probably Archaeal) genomes
...Spy were written by Sajia Akhter (sajia@stanford.edu) Edwards Bioinformatics Lab Improvements, bug fixes, and other changes were made by Katelyn McNair Edwards Bioinformatics Lab and Przemyslaw Decew...1409 days ago
wgd—simple command line tools for the analysis of ancient whole-genome duplications
...for modeling and visualization, rendering these analyses accessible to genomics researchers in a convenient manner. https://academic.oup.com/bioinformatics/article/35/12/2153/5162749...1387 days ago
SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
...16S, 18S, 23S, 28S, ITS and WGS) including bioinformatics treatment of raw reads for ta...(barplot, boxplot, heatmap, …).The bioinformatics treatment is based on Vsearch... here. More at https://bmcbioinformatics.biomedcentral.com/articles/10...1362 days ago
1291 days ago
Introduction to Bioinformatics and Computational Biology
This is the course material for STAT115/215 BIO/BST282 at Harvard University. Xiaole Shirley Liu (lead instructor)Joshua StarmerMartin HembergTing WangFeng Yue Ming TangY...1201 days ago
1220 days ago