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Read one or more FASTQ files, fastqe will compute quality stats for each file and print those stats as emoji... for some reason. Given a fastq file in Illumina 1.8+/Sanger format, calculate the mean (rounded) score for each position and print a corresponding emoji! https://fastqe.com/2094 days ago
- d2Tools are the toolbox for counting the frequency of K-tuple from sequencing datasets and then calculating the pairwise dissimilarity matrix between samples with t...
2049 days ago
Referee: Genome assembly quality scores
...formation from the reads that map to a site in an assembled genome to calculate a quality score for each posi...CG, CT, GG, GT, TT). Referee takes as input the genotype likelihoods calculated for all 10 genotypes given t...2003 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
ANItools is a software package written by PERL scripts that can be run in a Linux/Unix system. If you want to compare bacterial genomes and calculate their average nucleotide identity...1994 days ago
OrthoANI: An improved algorithm and software for calculating average nucleotide identity
...etails of the OrthoANI algorithm is given in (Lee et al. 2015). OAT employs an easy-to-follow Graphical User Interface that allow researchers to calculate OrthoANI values between genom...1966 days ago
EGAD: Ultra-fast functional analysis of gene networks
...by Degree) package, we present a series of highly efficient tools to calculate functional properties in netw...imal prior to guess candidates genes across multiple functional sets (calculate_multifunc, auc_multifunc).1964 days ago
MSAProbs - Parallel and accurate multiple sequence alignment
...gnment algorithm for protein sequences. The design of MSAProbs is based on a combination of pair hidden Markov models and partition functions to calculate posterior probabilities. Asse...1756 days ago
MGSE: Mapping-based Genome Size Estimation
...file based on the (sorted) BAM file (also possible via MGSE directly). Next, this COV file can be used by MGSE to calculate the coverage in provided reference regions and to calculate the total number of mapped ba...1565 days ago
truvari: Structural variant comparison tool for VCFs
Structural variant comparison tool for VCFs Given benchmark and comparsion sets of SVs, calculate the recall, precision, and f-measure. Spiral Genetics Motivation1399 days ago
ShadowCaster: a hybrid approach for the detection of horizontal gene transfer events in prokaryotes
ShadowCaster implements an evolutionary model to calculate Bayesian likelihoods for each ‘alien genes’ with an unusual sequence composition according to the host genome bac...1386 days ago
