Results for "calculation"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...exercises/gf1_output_5.html), Ensembl 'SyntenyView' shows conservation of large-scale gene order between species pairs. A brief summary of the calculation method appears at the bottom...2615 days ago
Bookmarks
- ...poorly assembled scaffold dataset. It is especially useful for newly sequenced genomes that have not been well annotated. Look for KaKs calculation: https://github.com/fumba/ka...
2811 days ago
molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
...nipulation and processing, including SMILES and SDfile conversion, normalization of molecules, generation of tautomers, molecule fragmentation, calculation of various molecular properti...1937 days ago
- +6 more Bookmarks
Pages
Check the Size of a directory & Free disk space.
...tal size of all the files that exist in the current directory.$ du --exculde=mp3Several times it required to exclude some directory in our size calculation. In such cases the above comm...3707 days ago
Top-level pages
- ...lem using a finite sequence of instructions. Algorithms are used for calculation, data processing, and many ot...umbers.Averroès (1126-1198) was using algorithmic methods for calculations.Adelard de Bath (12 th) intr...
3951 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...the String Graph Assembler (SGA), which assembled a human genome in less than 6 days using 54 Gb of RAM and a 123-processor compute cluster for calculation of an FM-index of the 1.2 bil...3784 days ago
- +2 more Top-level pages
Wire posts
Bio-Scripts
- ...collection of sequences in a fasta file ### Input : A fasta sequence file and the minimum length of sequence to consider it for the N50 calculation ### Output : None. The...
2709 days ago
- # $1 = vcf file # $2 = input bam file # $3 = output QV file module load samtools NUM_BP=`samtools depth $2 | perl -e '$c = 0; while(){chomp; @s = split(/\t/); if(...
1609 days ago
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Comments
Comment on "A quick guide to Phred scaling"
...esponds to a probability of error of 1 in 100, while a Phred score of 30 corresponds to a probability of error of 1 in 1000. Quality score calculation: The Phred score for each bas...420 days ago
