gggenomes: A grammar of graphics for comparative genomics
gggenomes is a versatile graphics package for comparative genomics. It extends the popular R visualization packageggplot2 by adding dedicated plot functions for genes, syntenic regions, etc. and verbs to manipulate the plot to, for example, quickly zoom in into gene neighborhoods.1191 days ago
Kmer: a suite of tools for DNA sequence analysis
More at https://help.rc.ufl.edu/doc/Kmer This also includes: A2Amapper: ATAC, Assembly to Assembly Comparision tool: Comparative mapping between two genome assemblies (same...993 days ago
GEnView: A phylogeny based comparative genomics software to analyze the genetic environment of genes
A phylogeny based comparative genomics software to analyze the genetic environment of genes. The user can select one or several taxa and provide one or several reference protein(s...861 days ago
Comparative Genomics Workshops !
...as to obtain a big picture look at the current state of the field of comparative genomics with a focus on...and microbes. https://www.genome.gov/event-calendar/perspectives-in-comparative-genomics-and-evolution832 days ago
Comparative genomics visualisation tools !
Comparative genomics visualisation tools !810 days ago
OrthoVenn3: an integrated platform for exploring and visualizing orthologous data across genomes
OrthoVenn3 is a powerful tool for comparative genomics analysis, used as a web server for full genome comparisons, annotation, and evolutionary analysis of orthologous clusters across multiple species. It has already been used by thousands of users from over 60 countries.371 days ago
bacLIFE: an automated genome mining tool for identification of lifestyle associated genes
...l workflow that annotates bacterial genomes and performs large-scale comparative genomics to predict bacterial...edded in a user-friendly interface for comprehensive and interactive comparative genomics. You can find the...53 days ago