Results for "comparing"
Blogs
...sed Evolution Highway (RH) http://eh-demo.ncsa.uiuc.edu/, which is a collaborative project designed to provide a visual means for simultaneously comparing genomes of multiple amniote s...3954 days ago
Tools to detect synteny blocks regions among multiple genomes
...evolution. It can also aid in identifying uncharacterized genes, putative regulatory elements and novel structural features of study species by comparing to a well annotated reference...2625 days ago
- +6 more Blogs
Bookmarks
- ...nteresting where they are covering the common algorithms underlying the following fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein sequences, pr...
3959 days ago
- ...he impact such an event may have on the organism. ChromEvol implements a series of likelihood models for the evolution of chromosome numbers. By comparing the fit of the different mode...
3403 days ago
- +24 more Bookmarks
Pages
Awesome perl frameworks, libraries and software - PART 4
...sourceforge.net/p/pgformatter/ and demo site at http://sqlformat.darold.net/ aspiers/mysqldiff - tool and CPAN suite backend for comparing MySQL database schemas micha...2509 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...(8):1157-8, 2011. PubMed BEDTools: a flexible suite of utilities for comparing genomic features. Quinlan and...26:493-500, 2010 PubMedCentral [describes the RSEM software package] Comparing genomes and assemblies; varia...3794 days ago
List of In-silico Binding Site Prediction Tools
...distribution of surrounding residues plays an important role for a variety of applications such as automated ligand docking or in situ modeling. Comparing the shape similarity of bindi...3758 days ago
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Wire posts
News
Barber pole worm , sheep pathogen sequenced !!!
...w provide a comprehensive understanding of how treatments against parasitic worms work and point to further new treatments and vaccines. By comparing the genome of the barber's po...3911 days ago
- ...to the reference genome cannot obscure the presence of an insertion or deletion. Scalpel's innovation is to repeatedly check its assembly before comparing to the reference genome, to a...
3561 days ago
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Video
Bioinformatics -- Understanding of living systems through information science
...es, bacteria, and so on. The first method used to analyze a genome is comparing it with the genomes of other...tware called Murasaki, which we also use to analyze large genomes, by comparing them with those of other orga...3931 days ago
Bio-Scripts
Calculate some statistics for a DNA alignment with Perl
...esults = $stats->calc_KaKs_pair($alnobj, $seq1id, $seq2id); print "comparing ".$results->[0]{'Seq1'}." and...lc_all_KaKs_pairs($alnobj); for my $an (@$results2){ print "comparing ". $an->{'Seq1'}." and ". $an...2664 days ago
Perl script to delete the adjacent repeats !
...more helps ... check out this #This bit of code will do the job: $string =~ s/(.)\1/$1/g #Alternatively, if you want to ignore case when comparing, you could use: $string =~...1565 days ago
Groups
...roup is being designed to cover some of the common algorithms underlying the following fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein sequences, pr...3916 days ago
Tags
- cisMuton is a caller that detects SNVs/indels by comparing target (foreground) and control (background) samples. cisMuton calls mutations from target capture regions, which are defined by the overlapping regions of ${GROUP}.target.bed and ${GROUP}.gene.bed. Please read the Q...
Tags: caller, detects, SNVs, indels, comparing, target, foreground, control, background, samples
1560 days ago
Comments
Comment on "Short-read assembly using Spades !"
...sembled genome. This can be done using tools such as QUAST or BUSCO. These tools assess the completeness and accuracy of the assembled genome by comparing it to reference genomes or se...430 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...Determine the synteny: Determine the synteny between the genomes by comparing the location and order of the...Validate the results: Validate the results of the synteny analysis by comparing them to other sources of geno...438 days ago
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