Results for "data compression"
Blogs
This is an extract of taxdump-readme.txt to be found at ftp://ftp.ncbi...id -- node id in GenBank taxonomy database parent tax_id -- parent node id in GenBank taxonomy database rank -- rank of th...fields: division id -- taxonomy database di...1547 days ago
New Machine Learning Packages in R
Machine Learning autokeras v1.0.1: Implements an interface to AutoKeras, an open source software libr...ng models and classifiers based on sparse matrix objects representing textual data. It in...1498 days ago
Useful links to therapy, disease, drug and drug-target network data:
Useful links to therapy, disease, drug and drug-target network data: DrugBank: a bioinformatics...ource combining detailed drug data with comprehensive drug targe...Drug-Target Network: network data of 890 drugs and 394 target h...Thomson Investigational drugs database including information on...1432 days ago
Perl one-liner for beginners !
I often use the following arguments to perl: -e Makes the line of code be executed instead of a script -n Fo...t > textwithoutuppercase.txt; Print only the second column of the data when u...1380 days ago
10 NGS services companies around the globe !
The global NGS services market is expected to reach USD 13.1 billion by 202...tools, pipelines and workflows, compute resources, data analysis reports, and case st...des a variety of services such as oligo synthesis, database co...1258 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling eval...ation from raw, short-read sequencing data to genotype a wide spectrum o...cripts that can assess the quality of data and the preprocessing pipelin...nd other low-complexity gene amplicon data; perfo...990 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly method for small to me...ad to treatments for infectious diseases. Raw NGS dataReads can be saved as a Fasta...ve and what the standard is like. If required, raw data cleanu...1203 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nasto...9 (2009). Trimmomatic: Trimmomatic: A flexible trimmer for Illumina Sequence Data. Bolge...1045 days ago
Basic Structure of Snakemake Pipeline Run !
/user/snakemake-demo$ ls config.json data envs scripts slurm-240702.out Snakefile data = mock data for the snakefile to use Snakefile = name of the snakemake “formula” file Note:...932 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adap...imer sequence removal (iVar; amplicon data only) Duplicate read marking...s and consensus; default for amplicon data || BCFTools, BEDTools; defaul...Primer trimming (Cutadapt; amplicon data only)...875 days ago
