Results for "data visualization"
Blogs
Introduction to Bioinformatics
Introduction to bioinformatics is a course for biologists and clinicians that would like to learn more about t...rch. The course covers many of the topics transformed by the emergence of big data and comp...1796 days ago
- This is an extract of taxdump-readme.txt to be found at ftp://ftp.ncbi...id -- node id in GenBank taxonomy database parent tax_id -- parent node id in GenBank taxonomy database rank -- rank of th...fields: division id -- taxonomy database divi...
1548 days ago
New Machine Learning Packages in R
Machine Learning autokeras v1.0.1: Implements an interface to AutoKeras, an open source software libr...ng models and classifiers based on sparse matrix objects representing textual data. It incl...1500 days ago
Useful links to therapy, disease, drug and drug-target network data:
Useful links to therapy, disease, drug and drug-target network data: DrugBank: a bioinformatics...ource combining detailed drug data with comprehensive drug targe...Drug-Target Network: network data of 890 drugs and 394 target h...Thomson Investigational drugs database including information on...1434 days ago
Perl one-liner for beginners !
I often use the following arguments to perl: -e Makes the line of code be executed instead of a script -n Fo...t > textwithoutuppercase.txt; Print only the second column of the data when usi...1381 days ago
10 NGS services companies around the globe !
The global NGS services market is expected to reach USD 13.1 billion by 202...tools, pipelines and workflows, compute resources, data analysis reports, and case st...des a variety of services such as oligo synthesis, database cons...1259 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling eval...ation from raw, short-read sequencing data to genotype a wide spectrum o...cripts that can assess the quality of data and the preprocessing pipelin...nd other low-complexity gene amplicon data; perform...992 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly method for small to me...ad to treatments for infectious diseases. Raw NGS dataReads can be saved as a Fasta...ve and what the standard is like. If required, raw data cleanup/...1204 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nasto...9 (2009). Trimmomatic: Trimmomatic: A flexible trimmer for Illumina Sequence Data. Bolger,...1047 days ago
Basic Structure of Snakemake Pipeline Run !
/user/snakemake-demo$ ls config.json data envs scripts slurm-240702.out Snakefile data = mock data for the snakefile to use Snakefile = name of the snakemake “formula” file Note:...934 days ago
