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Tools to detect synteny blocks regions among multiple genomes
...formulas, a suitable image of syntenic relationships or physical mapping can be obtained. http://www.automatizacionysistemas.com/Poster_MapSynteny.pdf One of the best synteny tuto...2624 days ago
List of gene ontology software and tools
The Gene Ontology (GO) is a set of associations from biological phrases to specific genes that are either chosen by trained curators or generated automatically. GO is...3723 days ago
Next Generation Sequencing (NGS) Tutorials
....co.uk/blog/2009/08/basics-sequencing-dna-part-2/ A window into third-generation sequencing http://hmg.oxfordjournals.org/content/19/R2/R227.full.pdf ============================...3501 days ago
Latest paper on comparison of mapping tools
...ttp://bmi.osu.edu/hpc/software/benchmark/ http://bmi.osu.edu/hpc/software/pmap/pmap.html Other similiar papers: http://online.liebertpub.com/doi/pdf/10.1089/cmb.2012.0022 http:/...3910 days ago
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BioRuby :Ruby packages for biologist
...by related Projects: Project treehttp://rubyforge.org/softwaremap/trove_list.php?form_cat=252 Referencehttp://www.jsbi.org/journal/GIW03/GIW03P191.pdf3961 days ago
Virtual Bioinformatics Online Tutorial
...rithms for Molecular Biology - Bioinformatics course notes, Tel Aviv University (TAU, Israel) Certificate Program in Bioinformatics - Standford Courses Offered by BU Bio...3935 days ago
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The human microbiome and what we do to it
...ally human — and we need our non-human bits to survive. This part of us now has a name — it's called our microbiome. But we're doing dreadful things to this hidden major...3869 days ago
2885 days ago
picard tools command to get some insert statistics
...lace #module load picard/2.0.1 java -Xmx16g -XX:PermSize=8g -jar $PICARD_HOME/picard.jar CollectInsertSizeMetrics MINIMUM_PCT=0 HISTOGRAM_FILE=.pdf INPUT= OUTPUT=.sorted.colle...1350 days ago
3719 days ago
Check the Size of a directory & Free disk space.
The amount of databases we bioinformatician deal are just HUGE … In such cases, we always need to check our server for free spaces etc. I planned this article to explains 2 simple commands that most bioinformatician want to know when they start using Linux / BioLinux. First: Size of a dire...Tags: Bioinformatics, Computational Biology, Linux, du, df, Size, File, Usage, Space, Check, Linux
3716 days ago
Comment on "CovCal: Coverage / Read Count Calculator"
Sequencing coverage is defined as the average number of reads that covers each base of the reference genome. Estimating the sequencing coverage is very...597 days ago
Comment on "Phylogenetic for Bioinformatics"
Nice evolutionary distance caculation methods @ https://www.cs.rice.edu/~nakhleh/COMP571/Slides/Phylogenetics-DistanceMethods-Full.pdf604 days ago