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Tools to detect synteny blocks regions among multiple genomes
...formulas, a suitable image of syntenic relationships or physical mapping can be obtained. http://www.automatizacionysistemas.com/Poster_MapSynteny.pdf One of the best synteny tuto...2611 days ago
List of gene ontology software and tools
The Gene Ontology (GO) is a set of associations from biological phrases to specific genes that are either chosen by trained curators or generated automatically. GO is...3711 days ago
Next Generation Sequencing (NGS) Tutorials
....co.uk/blog/2009/08/basics-sequencing-dna-part-2/ A window into third-generation sequencing http://hmg.oxfordjournals.org/content/19/R2/R227.full.pdf ============================...3488 days ago
Latest paper on comparison of mapping tools
...ttp://bmi.osu.edu/hpc/software/benchmark/ http://bmi.osu.edu/hpc/software/pmap/pmap.html Other similiar papers: http://online.liebertpub.com/doi/pdf/10.1089/cmb.2012.0022 http:/...3897 days ago
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BioRuby :Ruby packages for biologist
...by related Projects: Project treehttp://rubyforge.org/softwaremap/trove_list.php?form_cat=252 Referencehttp://www.jsbi.org/journal/GIW03/GIW03P191.pdf3948 days ago
Virtual Bioinformatics Online Tutorial
...rithms for Molecular Biology - Bioinformatics course notes, Tel Aviv University (TAU, Israel) Certificate Program in Bioinformatics - Standford Courses Offered by BU Bio...3922 days ago
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The human microbiome and what we do to it
...ally human — and we need our non-human bits to survive. This part of us now has a name — it's called our microbiome. But we're doing dreadful things to this hidden major...3856 days ago
2872 days ago
picard tools command to get some insert statistics
...lace #module load picard/2.0.1 java -Xmx16g -XX:PermSize=8g -jar $PICARD_HOME/picard.jar CollectInsertSizeMetrics MINIMUM_PCT=0 HISTOGRAM_FILE=.pdf INPUT= OUTPUT=.sorted.colle...1338 days ago
3706 days ago
Check the Size of a directory & Free disk space.
The amount of databases we bioinformatician deal are just HUGE … In such cases, we always need to check our server for free spaces etc. I planned this article to explains 2 simple commands that most bioinformatician want to know when they start using Linux / BioLinux. First: Size of a dire...Tags: Bioinformatics, Computational Biology, Linux, du, df, Size, File, Usage, Space, Check, Linux
3703 days ago
Comment on "CovCal: Coverage / Read Count Calculator"
Sequencing coverage is defined as the average number of reads that covers each base of the reference genome. Estimating the sequencing coverage is very...584 days ago
Comment on "Phylogenetic for Bioinformatics"
Nice evolutionary distance caculation methods @ https://www.cs.rice.edu/~nakhleh/COMP571/Slides/Phylogenetics-DistanceMethods-Full.pdf591 days ago