Nucleus: Python and C++ code for reading and writing genomics data.
...thon and C++ code designed to make it easy to read, write and analyze data in common genomics file formats like SAM and VCF. In addition, Nucleus enables painless integration with the...1565 days ago
Nextflow: Data-driven computational pipelines
Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most common scripting languag...1548 days ago
SEASTAR: Systematic Evaluation of Alternative STArt site in RNA
...using only RNA-seq data. It assembles novel TSSs based only on RNA-Seq data and merges them with known TSSs from a public database. This package enables high-quality TSS identificati...1372 days ago
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Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronological...808 days ago
InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams
..., a more flexible tool for interacting with Venn diagrams including up to six sets. It offers a clean interface for Venn diagram construction and enables analysis of set unions while...687 days ago
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MIKE: an ultrafast, assembly-, and alignment-free approach for phylogenetic tree construction
...sed k-mer algorithm). This algorithm is designed for the swift calculation of the Jaccard coefficient directly from raw sequencing reads and enables the construction of phylogene...38 days ago