Results for "errors"
Blogs
Five points for bioinformatics software/tools
...orked doc/postdoc!) so you are responsible for troubleshooting your own errors most of the time. We com..., in which you deal GB/TB of data are having maximum chances of getting errors, so please be careful and alw...3712 days ago
- ...faults again. Once the CPAN bundle had finished installing I tried to install GD::Graph by typing$ install GD::Graphbut it failed with hundreds of errors – the first of which wa...
3944 days ago
- +5 more Blogs
Bookmarks
REAPR: a universal tool for genome assembly evaluation
...f a reference genome for comparison. It can be used in any stage of an assembly pipeline to automatically break incorrect scaffolds and flag other errors in an assembly for manual ins...2955 days ago
- ...t and k-mer frequency. ALE pinpoints synthetic errors in both single and metagenomic assemblies, including single-base errors, insertions/deletions, genome...iences data, ALE identifies 12 of 12 synthetic errors in a Lambda Phage genome, sur...
2935 days ago
- +39 more Bookmarks
Pages
Genome Assembly Tools and Software - PART2 !!
...closing gaps, correcting sequence errors and transferring annotation....nce genome, correcting sequencing errors by locally clustering reads i...allows for the rapid discovery of errors and comparisons between simil...; Correct Substitution Sequencing Errors in WGS Data Sets Quake ...2690 days ago
Awesome perl frameworks, libraries and software - PART 2
...dealinging with C++) messages which can contain lot of template-related errors or warnings difficult to sort...simple - Perl module to make running system commands and capturing errors as simple as possible. PerlG...2498 days ago
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Top-level pages
- ...ed (such as ACEDB, the A C. Elegans DataBase for the C. elegans genome, FLYBASE for D. melanogaster etc). A major problem are errors in databanks and databases (mostly errors in annotation), in particular...
3951 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...y-aware detection and correction of sequencing errors. Kelley et al, Genome Biol 11...2010. PubMedCentral Correction of sequencing errors in a mixed set of reads. Salm...t evidence of editing or are simply sequencing errors - the authors stand by their...3784 days ago
- +7 more Top-level pages
Wire posts
News
Update Genome Workbench 2.7.15 released
...oolbar buttons Phylogenetic Tree Builder Tool: improved diagnostics of errors Multiple Alignment View: opt...table of genomes (load Genome) PDF export: fixed issue with XREF table errors Tree View: fixed issues with...3725 days ago
- ...tists with unprecedented power to rewrite the code of life. This means a genome can be edited, much as a writer might change words or fix spelling errors. It allows “customizing...
3718 days ago
ResearchLabs posts
- ...dependent pathway. We are interested in charactering the role of these complexes in crossover formation and distribution among all homolog pairs. Errors in this process are linked to...
2985 days ago
Bio-Scripts
Perl script to count the number of Adenine, Thymine, Guanine and Cytosine in your DNA Sequence
...count_of_A = 0; $count_of_C = 0; $count_of_G = 0; $count_of_T = 0; $errors = 0; foreach $base (@DNA...else { print "Error - Unknown base: $base\n"; ++$errors; } } print "Adenine =...2920 days ago
- ...ak" /home/urbe/Tools/Reapr_1.0.18/reapr break 00.assembly.fa 03.score.errors.gff.gz 04.break echo "[REA...ak" /home/urbe/Tools/Reapr_1.0.18/reapr break 00.assembly.fa 03.score.errors.gff.gz 04.break echo "[REA...
2103 days ago
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Tags
- LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines. Publication: L. Salmela, R. Walve, E. Rivals, and E. Ukkonen: Accurate selfcorrection of errors in long reads using de Bruijn graphs. Accepted to RECOMB-Seq 2016. ...
Tags: Bioinformatics, LoRMA, Tool, Correcting, Errors, Reads, Sequencing
2170 days ago
- BFC is a standalone high-performance tool for correcting sequencing errors from Illumina sequencing data. It is specifically designed for high-coverage whole-genome human data, though also performs well for small genomes. The BFC algorithm is a variant of the classical spectrum alignment algor...
Tags: BFC, standalone, high-performance, tool, correcting, sequencing, errors, Illumina, sequencing, data
2170 days ago
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Comments
Comment on "Short-read assembly using Spades !"
...control of raw reads: Before running the assembly, it is important to ensure that the raw reads are of high quality and do not contain sequencing errors or low-quality bases. This st...419 days ago
- ...quencing platforms, including Illumina, PacBio, and Oxford Nanopore. It can also simulate different types of sequencing errors, such as substitution, insertion, and deletion errors. dwgsim: dwgsim is a sho...
419 days ago
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