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Introduction to Bioinformatics
...torial at EBI Bioinforamtics Training Resources -Links to an excellent selection of bioinformatics tools training at NYU DNA composition and Exon prediction -Sequence bas...3936 days ago
Bioinformatics Courses Around the World
Bioinformatics Courses around the world Here is the list Bioinformatics courses offered around the world. Reasons for constructing this page are: To show the exten...3958 days ago
Next generation sequencing in R or bioconductor environment
...peaks, obtain enriched Gene Ontology (GO) terms, find the nearest gene, exon, miRNA or custom features suc...via Rsamtools) and associating them with genomic feature ranges, such as exons or genes. This way one can q...3640 days ago
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Perl script to find coding regions in DNA sequences
...test the program, save this two files in your current working directory: exon.fa and intron.fa. Both files contain the sequence of a real exon and intron, respectively. Ext...2170 days ago
Bash script to get exon fragments from genome files !
#Exons are already defined in the GTF file, so we simply need to print lines that are marked exonic. gunzip -c genome_file.gtf.gz | awk 'BEGIN{OFS="\t";} $3=="exon" {print $1,$4-1,$5}' | bedtools sort | bedtools merge -i - | gzip > my_exon.bed.gz1381 days ago
Comment on "Does anyone have Nanopore latest updates?"
Determining Exon Connectivity in Complex mRNAs by Nanopore Sequencing http://biorxiv.org/content/early/2015/05/22/0197523285 days ago
Comment on "List of popular bioinformatics software/tools"
TopHat http://tophat.cbcb.umd.edu/manual.shtml is a program that aligns RNA-Seq reads to a genome in order to identify exon-exon splice junctions. It is built on the ultrafast short read mapping program Bowtie.3663 days ago