BOL: Results for "exon"

Results for "exon"

- Strand@Strand
Webinar on Implications of Next Generation Sequencing in Molecular Diagnosis of Cancer on 28 Sep 2016
...blastoma patients to demonstrate how CNV analysis in Strand NGS enables researchers to detect and visualize copy number changes ranging from single exon to full gene. Speaker: Dr....
2818 days ago
- Rahul Nayak@rahul
Understanding liftOver !
...s multiple chains Duplicated in new: Sequence sufficiently intersects multiple chains Boundary problem: Missing start or end base in an exon For example: If you liftOve...
2175 days ago
+2 more Blogs

- Jit@jit.aber
HybPiper
...protein sequence. HybPiper also includes post-processing scripts, run after the main pipeline, to also extract the intronic regions flanking each exon, investigate putative paralog...
2754 days ago
- Jit@jit.aber
Mercator
...n building homology maps is to use exons that are orthologous in mult...For each genome, obtain a set of exon annotations. These annotations can be a combination of both exon predictions (e.g. Genscan) an...her gene annotations. Compare all exons against all exons in other g...
2660 days ago
+9 more Bookmarks

- Jitendra Narayan@admin
Bioinformatics Courses Around the World
Bioinformatics Courses around the world Here is the list Bioinformatics courses offered around the world. Reasons for constructing this page are: To show the exten...
3958 days ago
- John Parker@parker
Next generation sequencing in R or bioconductor environment
...peaks, obtain enriched Gene Ontology (GO) terms, find the nearest gene, exon, miRNA or custom features suc...via Rsamtools) and associating them with genomic feature ranges, such as exons or genes. This way one can q...
3640 days ago
+3 more Top-level pages

- Shruti Paniwala@shruti
Scalpel
...genome, to account for simple sequence repeats that are a regular source of error in indel calling. When Scalpel assembles an exon, it collects reads that map to that exon (including partial matches),...
3561 days ago
- BioStar@biostar
Primer BLAST !
BLAST team added a new feature (Max 3' match), shown in Figure 1, to Primer-BLAST that limits the length of 3' exon matches when designing exon-exon spanning primers. This makes it less likely tha...
1484 days ago

- Shruti Paniwala@shruti
Perl script to find coding regions in DNA sequences
...test the program, save this two files in your current working directory: exon.fa and intron.fa. Both files contain the sequence of a real exon and intron, respectively. Ext...
2170 days ago
- BioStar@biostar
Bash script to get exon fragments from genome files !
#Exons are already defined in the GTF file, so we simply need to print lines that are marked exonic. gunzip -c genome_file.gtf.gz | awk 'BEGIN{OFS="\t";} $3=="exon" {print $1,$4-1,$5}' | bedtools sort | bedtools merge -i - | gzip > my_exon.bed.gz
1381 days ago

- Rahul Agarwal@raag
Comment on "Does anyone have Nanopore latest updates?"
Determining Exon Connectivity in Complex mRNAs by Nanopore Sequencing http://biorxiv.org/content/early/2015/05/22/019752
3285 days ago
- Rahul Nayak@rahul
Comment on "List of popular bioinformatics software/tools"
TopHat http://tophat.cbcb.umd.edu/manual.shtml is a program that aligns RNA-Seq reads to a genome in order to identify exon-exon splice junctions. It is built on the ultrafast short read mapping program Bowtie.
3663 days ago