Results for "file"
Users
About me: ...as are welcome. Google scholar @ http://scholar.google.co.uk/citations?user=ySm4BzcAAAAJ&hl=en ResearchGate @ https://www.researchgate.net/profile/Jitendra_Narayan PubMed @ ht...25 days ago
- Website: http://www.linkedin.com/profile/view?id=155402415&trk=nav_responsive_tab_profile
1377 days ago
- +4 more Users
Blogs
- ...odules in Mac OS1. SetupCreate a folder for the files:$ mkdir -p /SourceCache$ cd...earch.cpan.org/~lds/GD-2.46/)Place the "tar.gz" files in "/SourceCache" and double...e build directory. Apply below patch to the Makefile.PL file (save the patch into...
3954 days ago
Computational Proteomics : Lets remember the basics
...utube.com/watch?v=fLSfgNxoVGk http://www.youtube.com/user/periodicvideos For drug design educational material, software, tools, databses, viewer, file format and many more stuff at...3502 days ago
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Bookmarks
Download mutliple fasta file from NCBI in one GO!!
if you have less time, then use three ways mentioned in bookmark link to extract/download all fasta sequences in single click given that you already have a list of GIs...3924 days ago
Java and BioJava Tutorial links
BioJava provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of this bookmark is to provide useful links for bioinformatician. Please add more useful Java and BioJava links here ...3917 days ago
- +130 more Bookmarks
Files
Bioinformatics approach to Boar Taint
...average coverage. Short reads generated from these samples mapped to Sus Scrofa version 10.2 reference assembly using Bowtie2. Alignment file then used for calling SNPs an...3804 days ago
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3882 days ago
- +6 more Files
Pages
Bio++ : C Language libraries for your biological need
...evolution Data structure and IO Phylogenetic trees.IO from newick files, with support for multiple e...stuction methods Parsimony (NNI)Distance matrices estimation and I/O to files in Phylip format.Distance me...3962 days ago
- I found several useful bioinformatics articles which exaplain, define and elaborate the bioinformatics in scientific way. Therefore, instead of writting it again...
3935 days ago
- +12 more Pages
Top-level pages
Structure of Binary files used for storing sequencing data-bam and sff
...bioinformatician needs to parse binary files like bam and sff. Advantage of binary files is that they occupy less spa...ho looking for structure of Bam and sff file: Bam: http://samtools.sourc...mats&m=doc&s=format#sff Binary file Editor and Viewer: http://mh...3934 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...oinformatics 25(16):2078-9, 2009 PubMedCentral SAM format specification file Efficient storage of high th...nd answers on bioinformatics and computational genomics. Information on file formats used by the Universit...3794 days ago
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Wire posts
News
- How to operate blast via shell ? Is any one please tell me how .sh file operate a blast query in blast database
3935 days ago
Update Genome Workbench 2.7.15 released
...f a user error Graphical Sequence View: PDF export fixed rendering of Markers with commas in the name Text View / Flat File: fixed Mac OS rendering issues Text View / Flat File: performance optimization, ex...3735 days ago
- +9 more News
Opportunity posts
- ...ef statement of motivation and research interests, and the names and contact information of two referees. Please send all documents as a single pdf file to monaghan@igb-berlin.de....
3743 days ago
- ...s Desirable : Experience in Perl/Python/R Remuneration : Rs. 20,000/- per month (consolidated) Scope of work : 1. Analysis of different file formats and their conversions...
3657 days ago
- +14 more Opportunity posts
Video
Bioinformatics 101 - Running BLAST
How to format the database for BLAST, run the command, view the output file, and use BioPerl and Perl to parse the output. By David Francis, Ohio State University. Delivered live at...3911 days ago
Beginners MYSQL Database Tutorial 1 # Download , Install MYSQL and first SQL query
...arches related to install mysql install mysql macSearches related to install mysql and write query install mysql query browser mysql write query to file how to write delete query in...3663 days ago
Bio-Scripts
- (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1231 days ago
- ...Parse XML::Parser XML::Simple LWP LWP::Simple LWP::Protocol::https Archive::Extract Archive::Tar Archive::Zip CGI DBI Time::HiRes DBD::mysql Encode File::Copy::Recursive Perl::OSType...
2159 days ago
- +170 more Bio-Scripts
Groups
...project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipu...3917 days ago
Tags
Check the Size of a directory & Free disk space.
The amount of databases we bioinformatician deal are just HUGE … In such cases, we always need to check our server for free spaces etc. I planned this article to explains 2 simple commands that most bioinformatician want to know when they start using Linux / BioLinux. First: Size of a dire...Tags: Bioinformatics, Computational Biology, Linux, du, df, Size, File, Usage, Space, Check, Linux
3717 days ago
Comments
Comment on "A quick guide to Phred scaling"
...ity scores are typically encoded in the quality score field of the FASTQ file format, which is a common for...e call and are typically encoded in the quality score field of the FASTQ file format....430 days ago
Comment on "Short-read assembly using Spades !"
...reads. If the reads are paired-end, they should be provided in separate files for each read. Run SPAd...> Replace read1.fastq and read2.fastq with the names of the input files containing the paired-end re...435 days ago
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