d3Network:Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R.
...p;R. The main idea is that you should able to take an R data frame with information about the relationships between members of a network and create full network graphs with one comma...2218 days ago
DendroPy: a Python library for phylogenetic computing
...only). You can install DendroPy by running: More information is available here: http://dendropy.org/downloading.html Documentation Full documentation is available he...2201 days ago
MITObim - mitochondrial baiting and iterative mapping
This document contains instructions on how to use the MITObim pipeline described in Hahn et al. 2013. The full article can be found here. Kindly cite the article if you are usin...2186 days ago
SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
...does not require prior sequencing of a reference genome: the same sequencing data can be used for the assembly and for the mapping of the reads. A full documentation on the pipeline...2164 days ago
BEAP: Blast Extension and Assembly Program
...quences that overlaps, directly or indirectly, with the "primer" therefore help to "extend" the length of the original sequence for constructing a "full length" sequence for function...2152 days ago
CGView - Circular Genome Viewer
...o a graphical map (PNG, JPG, or Scalable Vector Graphics format), complete with labels, a title, legends, and footnotes. In addition to the default full view map, the program can gen...2143 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughpu...1942 days ago
1938 days ago
LTR_Finder: an efficient program for finding full-length LTR retrotranspsons in genome sequences.
LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences. The Program first constructs all exact match pairs by a suffix-array based algori...1936 days ago
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