Results for "genome reports"
Blogs
Bioinformatics tools developed for Oxford Nanopore data analysis !
MinION is the only portable real-time device for DNA and RNA sequenci...gth, which offers great prospects for genome assembly. Generally, assemble...noOK NanopolishNanopore analysis and genome assembly softwarehttps://gith...b.com/arq5x/poretools SSPACE-LongReadGenome...2320 days ago
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. R... Code: $ randomreads.sh ref=genome.fasta out=reads.fq len=100 re....sh gains the ability to simulate metagenomes. coverage=X will automa... Code: $ randomreads.sh ref=genome....2270 days ago
Basic command-line to run BLAST
The goal of this tutorial is to run you through a demonstration of the comman...-c '^>' human.1.protein.faa This grep command uses the c flag, which reports a count of lines with match t...2243 days ago
Popular bioinformatics educational resources !
Followings are the list of popular bioinformatics educational resources Bii.a-star.edu...nology, Finland. Ornl.gov/sci/techresources/Human_Genome/education/education.shtml A...resource for introductory information on the Human Genome...2192 days ago
- LiftOver is a necesary step to bring all genetical analysis to the same reference b...iftOver can have three use cases: (1) Convert genome position from one genome assembly to another genome as...er from one build to another (3) Convert both genome...
2159 days ago
- ...*, this functionality continues to be under development) # # --genome_guided_bam :genome guided mode, provide path to...atus info during the run. # # --version :reports Trinity version (Trinity-v2.6...
2132 days ago
List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amino-acid sequence pattern that is widespread and has, or is co...tes. PEDANT -- Protein Extraction, Description and ANalysis Tool Conduct genome...1992 days ago
CANU genome assembly parameters !
...-p \ -d \ genomeSize=[g|m|k] \...nu -p test_asmbl \ -d asm_test3 \ genomeSize=2m \ -maxThreads=2...The basic stats of assembly can be read from reports generated by the assembler, o...1944 days ago
List of tools frequently used while genome assembly
List of tools frequently used while genome assembly: I have used the following assemblers Spades (v. 3.10.1)...18) Nanopolish (v. 0.8.3) I have used the following tools to assess genome...1929 days ago
Software for genome assembly !
List of bioinformatics tools/Software Website References for genome assembly: 1 Falcon https://github.com/PacificBiosciences/pb-assembly 2 Canu assembler http://canu.readthedocs...1343 days ago
