Results for "genotyping"
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Next Generation Sequencing (NGS) Tutorials
...ad cleaning, mapping and SNP calling using Next Generation Sequence 10.1186/1471-2164-12-285 A framework for variation discovery and genotyping using next-generation DNA seq...3489 days ago
- ...ome STRucture In Populations) is a suite of tools for discovering and genotyping structural variations using s...nd processing more genomes provide better results.To run discovery or genotyping on a single sequenced genome...
2799 days ago
- ...otivation is to use this tool to survey the genetic diversity of endangered species as the identified sequence differences can be used to design genotyping arrays to assist in the speci...
2623 days ago
FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
FastGT is a program package for whole-genome genotyping of genome variants directly from raw sequencing reads. It is written in C and runs in Linux. FastGT uses a list of variant-specif...1560 days ago
MALVA: Genotyping by Mapping-free ALlele Detection of Known VAriants
MALVA is able to genotype multi-allelic SNPs and indels without mapping reads MALVA calls correctly more indels than the most widely adopted genotyping pipelines Mapping-free approach...1560 days ago
- Variation graphs provide a succinct encoding of the sequences of many genomes. A variation graph (in particular as implemented in vg) is composed of: nodes, which...
1560 days ago
Best Practices for Variant Calling with the GATK
...F Video 03/19/15 Introduction to variant discovery: calling cohorts Louis Bergelson PDF Video 03/19/15 Variant calling and joint genotyping Sheila Chandran PDF Video...1535 days ago
Breedbase is a comprehensive breeding management and analysis software
...anagement and analysis software. It can be used to design field layouts, collect phenotypic information using tablets, support the collection of genotyping samples in a field, store lar...1216 days ago
- Resource for downloading all the HISAT2 related files Please cite: Kim, D., Paggi, J.M., Park, C. et al. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nat Biotechnol 37, 907–915 (2019). https://doi.org/10.1038/s41587-019-0201-4
964 days ago
Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation
Merfin, a k-mer based variant-filtering algorithm for improved accuracy in genotyping and genome assembly polishing. Merfin evaluates each variant based on the expected k-mer...764 days ago
