Results for "gff"
Blogs
Ancient whole genome duplication (WGD) detection tools !
...d with 32 chromosomes (2n = 4x8 = 32) Download the tutorial for CDS and GFF annotation files mkdir -p...//www.life.illinois.edu/ming/downloads/Spontaneum_genome/Sspon.v20190103.gff3.gzgunzip *.gz First conda...1151 days ago
Bookmarks
- ...gt; hg19 (GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)). It supports most commonly used file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF. CrossMap is design...
3004 days ago
- ...7), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)). It supports most commonly used file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF. CrossMap is design...
2795 days ago
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Pages
BioRuby :Ruby packages for biologist
...igh descriptive power. Classes for Multiple alignment (Bio::Alignment), Gene Ontology(Bio::GO), PDB (Bio::PDB), FANTOM database(Bio::FANTOM), GFF (Bio::GFF) and KEGGOrthology (Bio::KEGG...3943 days ago
Awesome perl frameworks, libraries and software - PART 2
...t generator ikegami/perl-LWP-Protocol-AnyEvent-http - Event loop friendly HTTP and HTTPS backend for Perl's LWP ihh/gfftools - Perl scripts for working with the GFF format iamcal/perl-Flickr-AP...2490 days ago
Top-level pages
Next generation sequencing in R or bioconductor environment
...entation rtracklayer rtracklayer provides an interface for exporting annotation feature data to various genome browsers and file formats (such as GFF). See the Small RNA Profiling...3620 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...nloaded tracks from dbSNP Also accepts: FASTA, GFF/GTF/GVF, BED, Wiggle, Cosmic,.../binding; Input: multiple: SGR/TXT, BED, BED6, GFF; if using prealigned sequence...digree data); updated April 2015 Input: FASTA, GFF3, GVF Output: CDR (condenser...2904 days ago
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Wire posts
News
ArrayGen Next Generation Genome Browser Coming Soon !!!
...equencing data analysis. It is platform independent and much simpler to use. The main features are, it supports many standard file formats such as GFF, BED, GTF, FASTA, VCF, BAM an...3071 days ago
Bio-Scripts
Download the gff files from NCBI using bash script/command
...Create a Directory mkdir genome_gff cd genome_gff # Look for genome assembly.../all/.+/)(GCF_.+)|\1\2/\2_genomic.gff.gz|' > genomic_file_fungi.../all/.+/)(GCA_.+)|\1\2/\2_genomic.gff.gz|' > genomic_file_bacteria.../all/.+/)(GCF_.+)|\1\2/\2_genomic.gff.gz|' > genomic_file_protozoa...2518 days ago
Plot custom gene density with R
library(karyoploteR) pp2245 days ago
- +11 more Bio-Scripts
Tags
- Genome Browser is the platform/database used for searching and retreiving sequences and annotation of genomes belong to various eukaryotes, prokaryotes, etc. Following are the weblink for different available browsers: http://www.ensembl.org/index.html http://ensemblgenomes.org/ http://genome....
Tags: Genome Browser, Organism, Plant, Animal, Bacteria, fungi, Genome Sequence, DNA, Sequencing, Annotation, SNP, gff, gtf, gff3, vcf, bed
3910 days ago
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Comments
Comment on "Sibelia: A comparative genomics tool"
...start > end. If you wish, you can obtain coordinates in GFF format. If you use the flag: -gff Then coordinates of synten...specifying flag: --allstages Files "blocks_coordsN.(txt|gff)" will contain their coordina...1280 days ago
- ... gffNameAttr [attribute_name = NUL...; GTF/GFF attribute to set the feature...
1516 days ago
