Results for "hidden%20markov%20model"
Blogs
Structural variation: the hidden genomic treasure
Genome re-sequencing projects have revealed substantial amounts of genetic variation between individuals extending beyond single nucleotide polymorphisms (SNPs) and short indel...2700 days ago
- AWK is a standard tool on every POSIX-compliant UNIX system. It’s like flex/lex, from the command-line, perfect for text-processing tasks and other scripting needs. It ha...
1833 days ago
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Bookmarks
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications...2570 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
dbCAN is a web server and DataBase for automated Carbohydrate-active enzyme ANnotation, funded by the BioEnergy Science Center of the DOE. Similar...2530 days ago
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Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it allows for easy implementation, it comes with a genuinely useful standard library that can itself...3945 days ago
Find certain files/documents in Linux OS
As bioinformatician I know the fact that we usually handle the large dataset and lost in the huge numbers of files and folders. In order to search the missing file a strong sea...3679 days ago
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Top-level pages
- The completion of the first human genome drafts was just a start of the modern DNA sequencing era which resulted in further invention, improved development toward new advanced...
3945 days ago
- "Bioinformatics is a science of biological predictions and analysis" -- Jitendra Narayan "The mathematical, statistical and computing methods that aim to solve biological...
3944 days ago
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Opportunity posts
PhD positions on integrative omics and phylogenomics
Would you like to participate in an exciting interdisciplinary research project to discover the hidden chemistry of plants and its evolution using computational omics approache...561 days ago
ResearchLabs posts
- The human genome project and similar projects in disease-causing organisms such as Plasmodium falciparum, which causes malaria in humans, have provided new tools for discovery...
3945 days ago
- In a lot of my work in bioinformatics, I have been using hidden Markov models (HMMs). As a postdoc with David Haussler at UCSC we developed the so-called profile HMMs (refs). S...
3867 days ago
Fun
Perl Poem: Parse it in both Perl and English!
Larry's, er, corpus has fortunately been overshadowed by that of the reigning Perl Poet, Sharon Hopkins. She has written quite a few Perl poems, as well as a paper on Perl poet...3916 days ago
Video
BBC Secret Universe: The Hidden Life of the Cell
This will help you to understand how a cell works (C) BBC MMXII3874 days ago
The human microbiome and what we do to it
Did you know that you and I are only 1% human — we've 90 trillion cells which don't belong to us. Yes we are more bacteria than human. Have you ever wondered what it mean...3853 days ago
Bio-Scripts
A multilayer perceptron (MLP) neural network in Perl
#!/usr/local/bin/perl -w #################################################### #MLP neural network in Perl Original source code by Phil Brierley #Translated into perl - cco...2913 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP-Pro-3335-MT:~/Downloads/autoConTAMPR/bin$ sudo apt install libpar-packer-perl Reading package lists... Done Bu...1508 days ago
Groups
INTIMATE secrets hidden in your DNA could be stolen without you even realising. By taking a glass from which you have drunk, a "genome hacker" could obtain a comprehensive scan...3950 days ago
Comments
Comment on "Which are the best statistical programming languages to study for a bioinformatician?"
I like the R language. The following table comparing the statistical capabilities of software packages: http://stanfordphd.com/Statistical_Software.html In stastistical languag...3549 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
Implementing Hidden Markov Models(HMM) for Information Extraction in Perl http://www.lwebzem.com/cgi-bin/res/HMM.html3814 days ago
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