Comment on "Short-read assembly using Spades !"
Short-read assembly is the process of constructing a genome sequence from a large number of short sequencing reads. SPAdes (St. Petersburg genome assem...426 days ago
Comment on "Coronavirus Resources !"
The US government SARS-CoV-2 Interagency Group (SIG) developed a Variant Classification scheme that defines three classes of SARS-CoV-2 variants: Variant of...972 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
halSynteny program makes it possible to speed up the computations by over two times in comparison with SatsumaSynteny2, another popular tool. Such high efficiency was atta...1422 days ago
Comment on "Nextflow: Data-driven computational pipelines"
A collection of high quality Nextflow pipelines https://github.com/nf-core/1547 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
Benchmark (or "High-confidence") variant calls and regions:We developed an integration pipeline to utilize sequencing data generated by multiple technologies to generate v...1571 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
NAR: Genomics and Bioinformatics publishes high quality research into genomics and bioinformatics, including novel computational or experimental methods and novel biological findings related to genomics, proteomics, transcriptomics, and epigenetics. https://academic.oup.com/nargab1870 days ago
Comment on "Want to Know which genome assembler rule the world ?"
Canu Assembler is my personal favourate.Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequelor Oxford Nanopore MinION).1961 days ago
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Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
urbe@urbo214b[genome] graphmap align -h []GraphMap - A very accurate and sensitive long-read, high error-rate sequence mapperGraphMap Version: v0.5.2Build date: Jun 6 2017...2303 days ago
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