Tools to detect synteny blocks regions among multiple genomes
...ynteny Mapping and Analysis Program) v4.0 is an automated system for identifying and displaying genome synteny...ful in studying genome duplication and evolution. It can also aid in identifying uncharacterized genes, putati...2625 days ago
List of gene ontology software and tools
...s http://gostat.wehi.edu.au/ GOrilla (Technion - Laboratory of Computational Biology , Israel Institute of Technology) GOrilla is a tool for identifying and visualizing enriched GO t...3725 days ago
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Useful Publications and Websites for Deep Sequencing Data Analysis
...ll Text From RNA-seq reads to differential expression results. Oshlack et al, Genome Biol 11(12):220, 2010 Full Text DEGseq: an R package for identifying differentially expressed gene...3794 days ago
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Biggest Human Brain Project (HBP) launched!!!
"In neuroscience, the project will use neuroinformatics and brain simulation to collect and integrate experimental data, identifying and filling gaps in our knowledge, and prioritisin...3877 days ago
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Samtools commands for bioinformatician !
...sal_sej_sorted.bam ### indexing sorted file # ouput is file.bai # always index sorted files samtools index sal_sej_sorted.bam.bam ### identifying genome variants (mpileup comm...1618 days ago
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iRNAD: a computational tool for identifying D modification sites in RNA sequence
iRNAD, for identifying D modification sites in RNA sequence. In this predictor, the RNA samples derived from five species were encoded by nucleotide chemical property and nucleotide density. Support vector machine was utilized to perform the classification. http://lin-group.cn/server/iRNAD...Tags: iRNAD, computational, tool, identifying, modification, sites, RNA, sequence
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Comment on "Tools for RNA classification"
...del approach to identify RNA homologs. It is particularly useful for identifying non-coding RNA (ncRNA) sequen...) algorithm to classify RNA sequences. It is particularly useful for identifying small functional RNA molecule...436 days ago
Comment on "Basic command-line to run BLAST"
...equences and identifies the most similar matches. This is useful for identifying the function of a newly disco...It has helped researchers make many important discoveries, including identifying new genes and understanding t...436 days ago