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3394 days ago
How to install Perl modules manually, using CPAN command, and other quick ways
...lled then flash the following message: Reading package lists... DoneBuilding dependency tree Reading state information... Donebioperl is already the...3943 days ago
List of gene ontology software and tools
...r experimental biologists to identify enriched Gene Ontology (GO) terms in a list of microarray probe sets or gene identifiers (with expression information for PAGE analysis). Also Easy...3703 days ago
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3890 days ago
Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of structural information on alpha helical membrane protein (MP...er which part of the model architecture are important to capture the information which encodes the membrane to...3938 days ago
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3861 days ago
Bio++ : C Language libraries for your biological need
...lculus Numerical tools: extended functions (log, factorial, etc.)Vector tools: element-wise functions, statistics (mean, var, sd, correlation, information theory)Classes for matrices i...3941 days ago
BioRuby :Ruby packages for biologist
...by University of Tokyo (Human Genome Center), Kyoto University(Bioinformatics Center) and the Open Bio Foundation. The project was supported by Information-technology Promotion Agency (...3941 days ago
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3941 days ago
Bioinformatics: Introduction to PERL
...rs. The course will be taught using the online Learning Perl materials created by Sofia Robb of the University of California Riverside. Further information is available.3944 days ago
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Postdoctoral position in bioinformatics @ Sweden
Information about the department The Department of Mathemat...ology and the University of Gothenburg (for more information see http://www.chalmers.se/ma...y, infectious diseases and cancer genomics. More information is available at http://bioinf...3941 days ago
The Centre for Bioinformatics, Biomarker Discovery and Information-Based Medicine (CIBM)
The Centre for Bioinformatics, Biomarker Discovery and Information-Based Medicine (CIBM) is committed to shortening the process of obtaining novel discoveries to achieve distinctively b...3941 days ago
3889 days ago
Bioinformatics -- Understanding of living systems through information science
..., computers and techniques from information science are not just used as...organisms, DNA contains genetic information, and this is called the genom...t we do is utilize those genome information to investigate the principles...nces may become almost entirely information science and computer science....3910 days ago
Bioinformatics 101 - Running BLAST
...use BioPerl and Perl to parse the output. By David Francis, Ohio State University. Delivered live at the Tomato Disease Workshop 2010. For more information, please visit http://www.exte...3890 days ago
Retrieve NCBI GenBank records with a range of accession numbers
#!/usr/bin/perl #FILE: ncbi_search.pl #AUTH: Paul Stothard (paul.stothard@gmail.com) use warnings; use strict; use Getopt::Long; use LWP::Simple; use URI::Esca...2909 days ago
Blast result parser with Perl and Bioperl
...sis. # use strict; use warnings; use Bio::SearchIO; # Usage information die "Usage: $0 \n", if (@A...end\thit_start\thit_end\tpositives\tidentical\n"; # extraction of information for each result recursively...2908 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...sible via http://metapred2cs.ibers.aber.ac.uk/ and for more detailed information about the system the articles...methods to eliminate the manipulated data and reach to clean/useful information. As days pass, the requiremen...2355 days ago
3697 days ago
Comment on "Short-read assembly using Spades !"
...ptions for tuning the assembly parameters, such as adjusting the k-mer length or enabling error correction. The SPAdes manual provides detailed information on how to use these options....414 days ago
Comment on "Basic command-line to run BLAST"
...command-line interface. Interpret the results: After the search is complete, the results can be viewed and downloaded. The results include information about the sequences that matc...417 days ago