List of gene ontology software and tools
...vigo.irb.hr/ QuickGo (EMBL-EBI Institute) It uses extensive computational filters to allow the generation of specific subsets of GO annotations, mapped to sequence identifiers of yo...3721 days ago
BBTools for bioinformatician !
...tons.fq in2=read2.fq,null out=mapped.sam append This will write...bbmap.sh in=reads.fq outu=unmapped.fq int=f repair.sh in=unmapp...p; Code: $ reformat.sh in=mapped.bam out=filtered.bam maxdelle... Code: splitsam.sh mapped.sam plus.sam minus.sam unmapp...2282 days ago
Integrative Genomics Viewer (IGV) tutorial
...llows you to view several types of data files involved in any NGS analysis that employs a reference genome, including how reads from a dataset are mapped, gene annotations, and predic...3596 days ago
Simons Genome Diversity Project
...diverse human populations All genomes in the dataset were sequenced to at least 30x coverage using Illumina technology. The sequencing reads were mapped and genotyped using a customi...1104 days ago
Bioinformatics approach to Boar Taint
...Duroc (D) pigs with varied boar taint levels were done in Illumina HiSeq2000 to >10X average coverage. Short reads generated from these samples mapped to Sus Scrofa versi...3801 days ago
Check Linux server configuration !!
...sp; 704 kBWriteback: 0 kBAnonPages: 377892 kBMapped:  ...3664 days ago
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Commercial and public next-gen-seq (NGS) software
...a large string matching toolbox. POSIX. Zoom - ZOOM (Zillions Of Oligos Mapped) is designed to map millions...rst, candidate exons are built directly from the positions of the reads mapped on the genome (without any ab...3531 days ago
Scientists map 17,294 proteins produced in human body
...cells mapping the large majority of the human proteome. The Indian scientists working in Bangalore, along with their American counterparts, have mapped more than 17,000 proteins in...3641 days ago
A comprehensive atlas of human gene activity released !!!
...dquo; — called “promoters” and “enhancers” — are the regions of DNA that manage gene activity. The researchers mapped the activity of 180,000 promo...3545 days ago
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Create genome scaffolding with Perl
...e code use Getopt::Long qw(:config auto_version auto_help pass_through); our $VERSION = "1.00"; =head1 NAME psl_scaffolder.pl - use self-mapped PSL file to scaffold a genome...2320 days ago
Comment on "List of non-commercial NGS genotype-calling software"
...ral probabilistic framework for structural variant discovery. [ paper-2014 ] manta – Structural variant and indel caller for mapped sequencing data. [ paper...1154 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
Reapr is a tool trying to find explicit errors in the assembly based on incongruently mapped reads. It is heavily based on too low span coverage, or reads mapping too far or too...1349 days ago