Results for "mapped"
Blogs
List of gene ontology software and tools
...vigo.irb.hr/ QuickGo (EMBL-EBI Institute) It uses extensive computational filters to allow the generation of specific subsets of GO annotations, mapped to sequence identifiers of yo...3707 days ago
BBTools for bioinformatician !
...tons.fq in2=read2.fq,null out=mapped.sam append This will write...bbmap.sh in=reads.fq outu=unmapped.fq int=f repair.sh in=unmapp...p; Code: $ reformat.sh in=mapped.bam out=filtered.bam maxdelle... Code: splitsam.sh mapped.sam plus.sam minus.sam unmapp...2268 days ago
- +4 more Blogs
Bookmarks
Integrative Genomics Viewer (IGV) tutorial
...llows you to view several types of data files involved in any NGS analysis that employs a reference genome, including how reads from a dataset are mapped, gene annotations, and predic...3582 days ago
Simons Genome Diversity Project
...diverse human populations All genomes in the dataset were sequenced to at least 30x coverage using Illumina technology. The sequencing reads were mapped and genotyped using a customi...1090 days ago
- +22 more Bookmarks
Files
Bioinformatics approach to Boar Taint
...Duroc (D) pigs with varied boar taint levels were done in Illumina HiSeq2000 to >10X average coverage. Short reads generated from these samples mapped to Sus Scrofa versi...3787 days ago
Pages
Check Linux server configuration !!
...sp; 704 kBWriteback: 0 kBAnonPages: 377892 kBMapped: ...3650 days ago
Top-level pages
- ...protein interactions predicted on the sequence level, can be studied in more detail on the structure level. Single Nucleotide Polymorphisms can be mapped on 3D structures of proteins...
3945 days ago
Commercial and public next-gen-seq (NGS) software
...a large string matching toolbox. POSIX. Zoom - ZOOM (Zillions Of Oligos Mapped) is designed to map millions...rst, candidate exons are built directly from the positions of the reads mapped on the genome (without any ab...3516 days ago
- +7 more Top-level pages
Wire posts
News
Scientists map 17,294 proteins produced in human body
...cells mapping the large majority of the human proteome. The Indian scientists working in Bangalore, along with their American counterparts, have mapped more than 17,000 proteins in...3627 days ago
A comprehensive atlas of human gene activity released !!!
...dquo; — called “promoters” and “enhancers” — are the regions of DNA that manage gene activity. The researchers mapped the activity of 180,000 promo...3530 days ago
- +1 more News
ResearchLabs posts
- ...e initial fine-scale maps using a variety of SV discovery approaches including: (i) paired-end mapping (or read pair analysis) based on abnormally mapped pairs of clone ends; (ii) rea...
2990 days ago
Bio-Scripts
- P
2869 days ago
Create genome scaffolding with Perl
...e code use Getopt::Long qw(:config auto_version auto_help pass_through); our $VERSION = "1.00"; =head1 NAME psl_scaffolder.pl - use self-mapped PSL file to scaffold a genome...2306 days ago
- +3 more Bio-Scripts
Tags
How to extract all the reads mapped at specific region in a genome?
I want to extract all the reads mapped at chr5: 200-6000.Tags: extract, reads, mapped, bam, sam, ngs
2285 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
SeqMonk is a program to enable the visualisation and analysis of mapped sequence data. It was written for use with mapped next generation sequence data but can in theory be used for any dataset which can be expressed as a series of genomic positions. It's main features are: Import of mapped da...Tags: SeqMonk, tool, visualise, analyse, high, throughput, mapped, sequence, data
2061 days ago
Comments
Comment on "List of non-commercial NGS genotype-calling software"
...ral probabilistic framework for structural variant discovery. [ paper-2014 ] manta – Structural variant and indel caller for mapped sequencing data. [ paper...1140 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
Reapr is a tool trying to find explicit errors in the assembly based on incongruently mapped reads. It is heavily based on too low span coverage, or reads mapping too far or too...1334 days ago
- +4 more Comments
