1052 days ago
Installing Busco version 4.0.6
...nda install -c bioconda -c conda-forge busco=4.0.6 Collecting package metadata (repodata.json): done Solvin...onal-0.68-pl526_2 perl-module-metad~ bioconda/linux-64::perl-module-metadata-1.000036-pl526_0 perl-para...1450 days ago
Installing pb-assembly on Linux !
...yan@hmem00 ~]$ conda install -c bioconda pb-assembly Fetching package metadata ........... Solving package...(denovo_asm) [jnarayan@hmem00 ~]$ conda install bwa Fetching package metadata ............. Solving packag...2032 days ago
Bash command to install Miniconda !
...[/data/sata_data/workshop/wsu29/miniconda3] >>> PREFIX=/data/sata_data/workshop/wsu29/miniconda3 Unpacking payload ... Collecting package metadata (current_repodata.json): done...1553 days ago
Bash command to install bwa, samtools, picard !
...2 tmp]$ conda install bwa Collecting package metadata (repodata.json): done Solvin...]$ conda install samtools Collecting package metadata (repodata.json): done Solvin...mp]$ conda install picard Collecting package metadata (repodata.json): done Solvin...1553 days ago
Bash command to install GATK, Bedtools and SnpEff !
...tmp]$ conda install gatk Collecting package metadata (repodata.json): done Solvin...]$ conda install bedtools Collecting package metadata (repodata.json): done Solvin...mp]$ conda install SnpEff Collecting package metadata (repodata.json): done Solvin...1553 days ago
1544 days ago
Install Ragout genome assembler
$ conda install -c bioconda ragout Collecting package metadata (repodata.json): done Solving environment: done ## Package Plan ## environment location: /home/anaconda3 a...1462 days ago
1460 days ago
1213 days ago