Tools to detect synteny blocks regions among multiple genomes
...ient and accurate automated tool for defining HSBs using datasets that may contain minor errors resulting from limitations in map construction methodologies. CoGe (http://genomevolution...2622 days ago
List of motif discovery tools !
...reeDet -- Predicting Functional Residues in Protein Sequence Alignments Predict functional sites in protein sequence alignments use different methodologies. W-ChIPMotifs -- ChIP-ba...2005 days ago
PGAP-X: Extension on pan-genome analysis pipeline
PGAP-X is a microbial comparative genomic analysis platform with graphic interface. Serials of algorithms and methodologies have been developed and integrated to analyze and visualize ge...2306 days ago
sim3C: Read-pair simulation of 3C-based sequencing methodologies (HiC, Meta3C, DNase-HiC)
Required python modules biopython intervaltree numpy scipy tqdm PyYAML2012 days ago
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Useful Publications and Websites for Deep Sequencing Data Analysis
...IP-seq: advantages and challenges of a maturing technology. Park, Nat Rev Genet. 10:669-80, 2009 PubMed ChIP-seq and Beyond: new and improved methodologies to detect and characterize pr...3791 days ago
3 days intensive course on Understanding 'omics data in Basel, Switzerland, 19-21st November
...an more efficient experiments - Correctly interpret results - Communicate results in publications more effectively The course focus is on methodologies, not on particular software t...3889 days ago
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sim3C: Read-pair simulation of 3C-based sequencing methodologies (HiC, Meta3C, DNase-HiC)
Required python modules biopython intervaltree numpy scipy tqdm PyYAMLTags: sim3C, Read-pair, simulation, 3C-based, sequencing, methodologies, HiC, Meta3C, DNase-HiC
2012 days ago
Comment on "List of Bioinformatics and Computational Biology Journals"
Journal of Biosciences https://link.springer.com/journal/12038, Also accept bioinformatics and methodologies papers impact factor: ~1.52552 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
Soft Computing Methodologies in Bioinformatics http://pdf.aminer.org/000/305/056/positive_and_negative_combination_effects_of_crossover_and_mutation_operators.pdf3832 days ago