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Results for "ncbi"

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  • Jit

    BLAST nr version 5 database, (nr_v5)

    NCBI have made changes the nr version 5 database, (nr_v5), to facilitate better search results and improved performance by reducing the number of redundant titles in the nr_v5 database used by webBLAST, which is also available for BLAST+ users. The changes in nr preserve the taxonomic div...

    Tags: BLAST, NCBI, nr, version, 5, database, nr_v5

    1711 days ago

  • Rahul Nayak

    Understanding accession number https://www.ncbi.nlm.nih.gov/Sequin/acc.html #Accession #NCBI

    Tags: Accession, NCBI

    1692 days ago

  • BioJoker

    IgBLAST: a popular NCBI package for classifying and analyzing immunoglobulin (IG) and T cell receptor (TCR) variable domain sequences

    NCBI team released a new version of IgBLAST with four new improvements. IgBLAST is a popular NCBI package for classifying and analyzing immunoglobulin (IG) and T cell receptor (TCR) variable domain sequences. Improvements are:     1. Support for the new FWR4 annotation feature in ...

    Tags: IgBLAST, NCBI, package, classifying, analyzing, immunoglobulin, IG, T-cell, receptor, TCR, variable, domain

    1558 days ago

  • Shruti Paniwala

    Magic-BLAST

    Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. Each alignment optimizes a composite score, taking into account simultaneously the two reads of a pair, and in case of RNA-seq, locating the candidate introns and adding up ...

    Tags: NCBI, Magic, BLAST, Documentation

    1501 days ago

  • LEGE

    Blast on Docker, Google Cloud, Amazon Cloud

    As announced in a previous post, we offer a Docker version of NCBI BLAST+ that you can use locally or on the Google Cloud where we have pre-loaded BLAST databases.  We are happy to announce that the same functionality is now available on the Amazon Cloud.  ...

    Tags: NCBI, BLAST+, Google, BLAST databases, Amazon, Cloud

    1390 days ago

  • BioStar

    Useful Gene Ontology dataset at NCBI ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ #Data #NCBI #Genes

    Tags: Data, NCBI, Genes

    1355 days ago

  • Neelam Jha

    NCBI BLAST have added new columns to the Descriptions

    NCBI BLAST have added new columns to the Descriptions Table for web BLAST output. The new columns are  Scientific Name, Common Name, Taxid, and Accession Length. Common Name and Accession Length are now part of the default display. You can click 'Select columns' or 'Manage columns' to add or...

    Tags: NCBI, BLAST, add, columns, Descriptions, Table, web, BLAST, output

    1245 days ago

  • BioStar

    NCBI Datasets pages

    Update! Assembly and Genome record pages now redirect to new NCBI Datasets pages. NCBI Datasets is a new resource that makes it easier to find and download genome data. Learn more: https://ncbiinsights.ncbi.nlm.nih.gov/2023/07/11/ncbi-datasets-genome-assembly-pages/ #NCBICGR Effective July ...

    Tags: Assembly, Genome, Record, pages, redirect, NCBI, Datasets

    292 days ago

  • Neelam Jha

    NCBIBLAST+ 2.14.1 now available

    #NCBIBLAST+ 2.14.1 now available with improved documentation, faster and more reliable database downloads, and some bug fixes.  Check out the changes they made. They added the cleanup-blastdb-volumes.py script to remove unused BLAST database volumes. Read the documentation h...

    Tags: NCBIBLAST, blast, NCBI, Homology, Search, Sequence, Update, Available

    243 days ago

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