Comment on "Tools to detect synteny blocks regions among multiple genomes"
Genome synteny analysis is the comparison of the genomic structure and gene content of two or more related species. Here are some general steps to follow for conducting a ge...439 days ago
Comment on "Basic command-line to run BLAST"
Following steps need to followed while doing any homology search. BLAST (Basic Local Alignment Search Tool) is a widely used program for searching...439 days ago
Comment on "Basic command-line to run BLAST"
Detail tutorial here https://www.ncbi.nlm.nih.gov/books/NBK279684/637 days ago
Comment on "ncbi-datasets-cli -- Quickstart: command line tools !"
(base) [jnarayan@hn1 TOOLS]$ curl -o datasets 'https://ftp.ncbi.nlm.nih.gov/pub/datasets/command-line/LATEST/linux-amd64/datasets' % Total % Received % Xferd Average Speed...895 days ago
Comment on "Download desire version of Blast software !"
Latest blast software and old versions https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/957 days ago
Comment on "Download desire version of Blast software !"
Blast v2.12 wget https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ncbi-blast-2.12.0+-x64-linux.tar.gz957 days ago
Comment on "Download desire version of Blast software !"
Blast database version 4 @ https://ftp.ncbi.nlm.nih.gov/blast/db/v4/958 days ago
Comment on "List of non-commercial NGS genotype-calling software"
Delly – Structural variant discovery by integrated paired-end and split-read analysis. [ paper-2012 ] lumpy – lumpy: a general probabilistic...1158 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments https://pubmed.ncbi.nlm.nih.gov/32463100/1260 days ago
Comment on "Sibelia: A comparative genomics tool"
Basic usage =========== In this manual it is assumed that "Sibelia" is properly installed and the directory with "Sibelia.py" is in your "PATH" environment variable or in...1300 days ago