Structural variation: the hidden genomic treasure
...nted. Tools CNVnatora tool for CNV discovery and genotyping from depth of read mapping.2011a,2011b AGEa tools that implements an algorithm for optimal alignment of sequences with S...2696 days ago
Frequently used bioinformatics tools for viral genome analysis !
...Keane JA, Kellam P, Otto TD. Bioinformatics. 2015 Jul 15;31(14):2374-6. doi: 10.1093/bioinformatics/btv120. Epub 2015 Feb 28. Adapter sequences: Optimal enzymes for amplifying sequen...1040 days ago
InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
...e genome-wide scale. InfoGenomeR integrates cancer purity and ploidy, total CNAs, allele-specific CNAs, and haplotype information to identify the optimal breakpoint graph representing...1090 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly). It uses information from paired-end/mate-pair/lon...2788 days ago
Genome Assembly Tools and Software - PART2 !!
...enome Sequence DatahapAssembly beats the previous best for the important Haplotype Assembly Problem. It is an approach to finding optimal solutions for the haplotype a...2679 days ago
Awesome perl frameworks, libraries and software - PART 3
...kaccha/nodebrew - Node.js version manager pasky/speedread - A simple terminal-based open source Spritz-alike (per-word RSVP aligned on optimal reading points) plack/Plack&...2487 days ago
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Phased Human Genome Assembly !
...ty, Most Contiguous Individual Human Genome Assembly to Date Blog post: For Reference-Grade Human Genome Assemblies, SMRT Sequencing Yields Optimal Results Webinar: Assem...2029 days ago
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Opera: An optimal genome scaffolding program
Opera (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly ). It uses information from paired-end or long reads to optimally order and orient contigs assembled from shotgun-sequencing reads.An updated version called OPERA-LG has b...Tags: Opera, optimal, genome, scaffolding, program
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FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
Sequence alignment algorithms are widely used to infer similarirty and the point of differences between pair of sequences. FOGSAA is a fast Global alignment algorithm. It is basically a branch and bound approach which starts branch expansion in a greedy way taking the symbols from the given pair ...Tags: FOGSAA, Fast, Optimal, Global, Sequence, Alignment, Algorithm
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