2467 days ago
Install Samtools, Bcftools and htslib on Ubuntu !
#Inspired from online search sudo apt-get update sudo apt-get install gcc sudo apt-get install make sudo apt-get install libbz2-dev sudo apt-get install zlib1g-dev...1555 days ago
Bash commandline to install Anaconda !
#The line begins with $ are the commands $ mkdir tmp $ cd tmp/ $ curl -O https://r...64.sh $ bash Anaconda3-2019.03-Linux-x86_64.sh In order to...rc ==> For changes to take effect, close and re-open your cu...1553 days ago
Bash command to install Miniconda !
(base) [wsu29@bladeamd-2 tmp]$ wget https://repo.anaconda.com/miniconda/Miniconda3-latest-...t-Linux-x86_64.sh Welcome to Miniconda3 4.7.12 In order to...rc ==> For changes to take effect, close and re-open your cu...1553 days ago
Pack a perl program with their dependencies on Ubuntu !
...$ ./web https://bioinformaticsonline.com #It return this...ne appointment portal for all your medical needs like, online doctor...ing on of lab tests, creating your online medical records for easy...studies in public health and medicine. Biostatistics experts arriv...1509 days ago
Commands to install conda in Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ mkdir jittmp jit@jit-HP-Pro-33...lcome to Anaconda3 2019.03 In order to continue the installation...zed to use the MKL binaries with your installation of Anacon da Di...to use the cuDNN binarie s with your ins...o take effect, close and re-open your cu...1509 days ago
Bash online to update Linux OS
sudo bash -c 'for i in update {,full-,dist-}upgrade auto{remove,clean}; do apt-get $i -y; done'688 days ago
987 days ago
Perl script to calculate the basic stats of the assembled genome !
#!/usr/bin/perl use strict; use warnings; use Bio::SeqIO; # Input file containing the ge...tigs++; push @contig_lengths, $length; } # Sort contig lengths in descending order...92 days ago
Python script for basic stats of the assembled genome !
from Bio import SeqIO import statistics # Input file containing the genome assembly in FAS...ontigs += 1 contig_lengths.append(length) # Sort contig lengths in descending order...92 days ago